Escherichia coli O25b:H4-ST131 4993 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli O25b:H4-ST131 4993 RM systems
Ref: Shropshire,W.C. et al. mSystems (2022) In press
REBASE ref # 35163
| Sequence length: | GenBank #: | |
| Chromosome: | 5,341,056 bp | CP103557 |
| plasmid pMB8413_1: | 125,598 bp | CP103558 |
REBASE acronym: Eco4993
Org_num: 61560
All begin M5T49_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3320 | transposase domain-containing protein | |||
| 3325 | M | M.Mmo48659ORF2735P (100% identity) | M.Eco4993ORF3325P | |
| 3330 | AAA family ATPase | |||
| 3335 | S | S.Mmo48659ORF2735P (100% identity) | S.Eco4993ORF3325P | |
| 3340 | R | EcoW004ORF12170P (100% identity) | Eco4993ORF3325P | |
| 3345 | 60 aa hypothetical protein | |||
| 20285 | type IV toxin-antitoxin system AbiEi family | |||
| 20290 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco4993ORF20295P |
| 20295 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco4993ORF20295P |
| 20300 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco4993ORF20295P |
| 20305 | ash family protein | |||
| 22110 | restriction endonuclease | |||
| 22115 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco4993ORF22115P |
| 22120 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco4993ORF22115P |
| 22125 | type I restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1695 | cell division protein DamX | |||
| 1700 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco4993DamP |
| 1705 | ribulose-phosphate 3-epimerase | |||
| 2295 | DUF2556 family protein | |||
| 2300 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco4993ORF2300P |
| 2305 | DNA-binding transcriptional regulator Fis | |||
| 6235 | PerC family transcriptional regulator | |||
| 6240 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.Eco4993ORF6240P |
| 6245 | LexA family transcriptional regulator | |||
| 6280 | 95 aa hypothetical protein | |||
| 6285 | M | M.EcosR6ORF7985P (100% identity) | M.Eco4993ORF6285P | |
| 6290 | phage lysis protein EssD | |||
| 6415 | 257 aa hypothetical protein | |||
| 6420 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.Eco4993ORF6420P |
| 6425 | R | Sso8033ORF3755P (100% identity) | CCWGG | Eco4993ORF6420P |
| 6430 | 121 aa hypothetical protein | |||
| 7830 | NinE family protein | |||
| 7835 | M | M.EcoOS142ORF7470P (100% identity) | M.Eco4993ORF7835P | |
| 7840 | protein ninF | |||
| 10640 | phosphohydrolase | |||
| 10645 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco4993DcmP |
| 10650 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco4993DcmP |
| 10655 | drug/metabolite exporter YedA | |||
| 11525 | antitermination protein | |||
| 11530 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.Eco4993ORF11530P |
| 11535 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R1.Eco4993ORF11530P |
| 11540 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R2.Eco4993ORF11530P |
| 11545 | TrmB family transcriptional regulator | |||
| 14525 | DUF3927 family protein | |||
| 14540 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco4993ORF14540P |
| 14545 | TrmB family transcriptional regulator | |||
| 16795 | helix-turn-helix domain-containing protein | |||
| 16800 | M | M.KpnYN1ORFGP (89% identity) | M.Eco4993ORF16800P | |
| 16805 | 71 aa hypothetical protein | |||
| 23775 | response regulator receiver domain | |||
| 23780 | R | EcosS3ORF15775P (100% identity) | Eco4993ORF23785P | |
| 23785 | M | M.EcosS3ORF15775P (100% identity) | M.Eco4993ORF23785P | |
| 23790 | conjugal transfer protein TraG N-terminal | |||
| plasmid pMB8413_1 | ||||
| 26545 | 103 aa hypothetical protein | |||
| 26550 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco4993ORF26550P | |
| 26555 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22105 | BrnT family toxin | |||
| 22110 | R | Ecou021MrrP (100% identity) | Eco4993MrrP | |
| 22115 | type I restriction-modification system subunit | |||
| 22450 | glycosyltransferase | |||
| 22455 | R | EcosS3McrBP (100% identity) | Eco4993McrBP | |
| 22460 | R | EcosS9McrCP (100% identity) | Eco4993McrCP | |
| 22465 | 195 aa hypothetical protein | |||