Escherichia coli XH989 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli XH989 RM systems
Ref: Wang,Y. et al. unpublished
REBASE ref # 35194
| Sequence length: | GenBank #: | |
| Chromosome: | 4,930,543 bp | CP102679 |
| plasmid pXH989-OQX: | 100,225 bp | CP102677 |
REBASE acronym: EcoXH989
Org_num: 61575
All begin NU949_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4790 | transposase | |||
| 4795 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoXH989ORF4800P |
| 4800 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoXH989ORF4800P |
| 4805 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoXH989ORF4800P |
| 4810 | AAA family ATPase | |||
| 20985 | restriction endonuclease | |||
| 20990 | M | M.EmaC12ORF11130P (100% identity) | CGAYNNNNNNNTTC | M.EcoXH989ORF20990P |
| 20995 | S | S.EcosEC21ORF19195P (100% identity) | CGAYNNNNNNNTTC | S.EcoXH989ORF20990P |
| 21000 | R | EcosEC21ORF19195P (100% identity) | CGAYNNNNNNNTTC | EcoXH989ORF20990P |
| 21005 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2370 | cell division protein DamX | |||
| 2375 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoXH989DamP |
| 2380 | ribulose-phosphate 3-epimerase | |||
| 2900 | DUF2556 family protein | |||
| 2905 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoXH989ORF2905P |
| 2910 | DNA-binding transcriptional regulator Fis | |||
| 10320 | HD domain-containing protein | |||
| 10325 | M | M.SflN107DcmP (100% identity) | CCWGG | M.EcoXH989DcmP |
| 10330 | V | V.SflN107DcmP (100% identity) | V.EcoXH989DcmP | |
| 10335 | drug/metabolite exporter YedA | |||
| 13340 | DUF1367 family protein | |||
| 13345 | R | EcosEC21ORF11865P (100% identity) | GTCGAC | EcoXH989ORF13350P |
| 13350 | M | M.EcosEC21ORF11865P (99% identity) | M.EcoXH989ORF13350P | |
| 13355 | DUF977 family protein | |||
| 20765 | 73 aa hypothetical protein | |||
| 20770 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoXH989ORF20770P | |
| 20775 | 103 aa hypothetical protein | |||
| plasmid pXH989-OQX | ||||
| 1530 | IS21-like element IS100kyp family helper ATPase | |||
| 1535 | M | M.EcoXH987ORF1450P (100% identity) | M.EcoXH989ORF1535P | |
| 1550 | tellurite/colicin resistance protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20980 | BrnT family toxin | |||
| 20985 | R | EcosEC21MrrP (100% identity) | EcoXH989MrrP | |
| 20990 | type I restriction-modification system subunit | |||
| 21300 | glycosyltransferase | |||
| 21305 | R | EcosS3McrBP (100% identity) | EcoXH989McrBP | |
| 21310 | R | EcosS9McrCP (100% identity) | EcoXH989McrCP | |
| 21315 | Alw26I/Eco31I/Esp3I family type II restriction | |||