Salmonella enterica IndS102 |
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Putative Salmonella enterica IndS102 RM systems
Ref: Du,P. et al. mSystems, e0025322 (2022) In press
REBASE ref # 35096
| Sequence length: | GenBank #: | |
| Chromosome: | 4,812,175 bp | CP101359 |
| plasmid pIndS102_1: | 17,435 bp | CP101360 |
| plasmid pIndS102_2: | 12,898 bp | CP101361 |
REBASE acronym: Sen102
Org_num: 61142
All begin NMV03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4005 | transposase | |||
| 4010 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Sen102ORF4015P |
| 4015 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Sen102ORF4015P |
| 4020 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Sen102ORF4015P |
| 4025 | AAA family ATPase | |||
| plasmid pIndS102_1 | ||||
| 23255 | M | M.SenSI167ORF3215P (96% identity) | M.Sen102ORF23255P | |
| 23260 | IS3 family transposase | |||
| plasmid pIndS102_2 | ||||
| 23330 | S | S.SenSI167ORF3215P (100% identity) | S.Sen102ORF23330P | |
| 23335 | DUF4268 domain-containing protein | |||
| 23340 | R | SenSI167ORF3215P (100% identity) | Sen102ORF23330P | |
| 23345 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1885 | cell division protein DamX | |||
| 1890 | M | M.StyTDamP (100% identity) | GATC | M.Sen102DamP |
| 1895 | ribulose-phosphate 3-epimerase | |||
| 2380 | DUF2556 family protein | |||
| 2385 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.Sen102ORF2385P |
| 2390 | DNA-binding transcriptional regulator Fis | |||
| 9700 | phosphohydrolase | |||
| 9705 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.Sen102DcmP |
| 9710 | V | V.Sensp14178DcmP (100% identity) | CCWGG | V.Sen102DcmP |
| 9715 | drug/metabolite exporter YedA | |||
| 20100 | YebC/PmpR family DNA-binding transcriptional | |||
| 20105 | R | Sensp14178ORF19855P (100% identity) | Sen102ORF20105P | |
| 20110 | DUF2220 domain-containing protein | |||
| 20145 | TnsA endonuclease N-terminal domain-containing | |||
| 20150 | R | SenV2ORF20065P (100% identity) | Sen102ORF20150P | |
| 20155 | malate transporter | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17490 | small effector SsaA | |||
| 17495 | R | Sensp14154ORF17330P (100% identity) | CAGAG | Sen102ORF17505P |
| 17500 | IS1-like element IS1B family transposase | |||
| 17505 | M | M.Sensp14152ORF17835P (100% identity) | CAGAG | M.Sen102ORF17505P |
| 17510 | MFS transporter | |||