Vibrio alginolyticus VA20-8B-3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Vibrio alginolyticus VA20-8B-3 RM systems
Ref: Nakayama,T. et al. unpublished
REBASE ref # 34973
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,441,245 bp | AP026555 |
| plasmid pVA20-8B-3: | 323,648 bp | AP026557 |
REBASE acronym: Val8B3
Org_num: 60689
All begin VA208B3_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 6230 | 114 aa hypothetical protein | |||
| 6240 | M | M.VpaX1ORF12865P (100% identity) | M.Val8B3ORF6240P | |
| 6250 | S | S.VpaX1ORF12865P (100% identity) | S.Val8B3ORF6240P | |
| 6260 | R | VpaX1ORF12865P (100% identity) | Val8B3ORF6240P | |
| 6270 | 346 aa hypothetical protein | |||
| 22280 | 174 aa hypothetical protein | |||
| 22290 | C | C.VpaX1ORF4520P (100% identity) | C.Val8B3ORF22360P | |
| 22300 | R | VpaX1ORF4520P (100% identity) | Val8B3ORF22360P | |
| 22310 | 425 aa hypothetical protein | |||
| 22320 | site-specific DNA-methyltransferase | |||
| 22330 | 68 aa hypothetical protein | |||
| 22340 | translation elongation factor Ts | |||
| 22350 | 49 aa hypothetical protein | |||
| 22360 | M | M.VpaX1ORF4520P (100% identity) | M.Val8B3ORF22360P | |
| 22370 | S | S.VpaX1ORF4520P (100% identity) | S.Val8B3ORF22360P | |
| 22380 | 636 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 22310 | 425 aa hypothetical protein | |||
| 22320 | M | M.VpaX1ORF4540P (100% identity) | M.Val8B3ORF22320P | |
| 22330 | 68 aa hypothetical protein | |||
| 27470 | ribulose-phosphate 3-epimerase | |||
| 27480 | M | M.VphVPD14DamP (100% identity) | GATC | M.Val8B3DamP |
| 27490 | cell division protein DamX | |||
| plasmid pVA20-8B-3 | ||||
| 46970 | 103 aa hypothetical protein | |||
| 46980 | M | M.Vvu8B2ORF45090P (100% identity) | M.Val8B3ORF46980P | |
| 46990 | DNA helicase | |||
| 49140 | 137 aa hypothetical protein | |||
| 49150 | M | M.Vvu8B2ORF46460P (100% identity) | M.Val8B3ORF49150P | |
| 49160 | attachment invasion locus protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1570 | 312 aa hypothetical protein | |||
| 1580 | M | M.YpaBP01ORF11600P (69% identity) | M.Val8B3ORF1580P | |
| 1590 | R | Vmi113IP (98% identity) | Val8B3ORF1580P | |
| 1600 | transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 13790 | 448 aa hypothetical protein | |||
| 13800 | R | VpaBM8AORF17565P (98% identity) | Val8B3ORF13800P | |
| 13810 | FRG domain-containing protein | |||