Escherichia coli TUM13926 |
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Putative Escherichia coli TUM13926 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 4,997,732 bp | AP026518 |
| plasmid pMTY13926_IncF: | 149,987 bp | AP026519 |
| plasmid pMTY13926_IncN: | 49,498 bp | AP026522 |
| plasmid pMTY13926_NA1: | 114,665 bp | AP026520 |
| plasmid pMTY13926_NA2: | 67,857 bp | AP026521 |
REBASE acronym: Eco13926
Org_num: 60400
All begin TUM13926_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 31960 | endoribonuclease SymE | |||
| 31970 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco13926ORF31990P |
| 31980 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco13926ORF31990P |
| 31990 | M | M.Ecou021ORF19870P (99% identity) | RTACNNNNGTG | M.Eco13926ORF31990P |
| 32000 | 388 aa hypothetical protein | |||
| 35430 | 52 aa hypothetical protein | |||
| 35440 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco13926ORF35450P |
| 35450 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.Eco13926ORF35450P |
| 35460 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco13926ORF35450P |
| 35470 | 267 aa hypothetical protein | |||
| plasmid pMTY13926_IncF | ||||
| 48310 | repressor TnpA | |||
| 48320 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNNCTGG | Eco13926ORF48340P |
| 48330 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S1.Eco13926ORF48340P |
| 48340 | M | M.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | M.Eco13926ORF48340P |
| 48350 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6620 | inner membrane transporter YedA | |||
| 6630 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco13926DcmP |
| 6640 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco13926DcmP |
| 6650 | phosphohydrolase | |||
| 20350 | DNA-binding protein Fis | |||
| 20360 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco13926ORF20360P |
| 20370 | acrEF/envCD operon transcriptional regulator | |||
| 21470 | ribulose-phosphate 3-epimerase | |||
| 21480 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco13926DamP |
| 21490 | cell division protein DamX | |||
| 31270 | 141 aa hypothetical protein | |||
| 31280 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco13926ORF31280P |
| 31290 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco13926ORF31280P |
| 31300 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco13926ORF31280P |
| 31310 | mcrBC 5-methylcytosine restriction system | |||
| 42080 | 71 aa hypothetical protein | |||
| 42090 | M | M.KpnYN1ORFGP (89% identity) | M.Eco13926ORF42090P | |
| 42100 | 118 aa hypothetical protein | |||
| 46610 | 65 aa hypothetical protein | |||
| 46620 | M | M.EcosS9ORF10680P (100% identity) | A | M.Eco13926ORF46620P |
| 46630 | anti-adapter protein IraM | |||
| plasmid pMTY13926_IncN | ||||
| 50810 | IS6 family transposase | |||
| 50820 | R | YpsR1ORFAP (100% identity) | CCWGG | Eco13926ORF50830P |
| 50830 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Eco13926ORF50830P |
| 50840 | 88 aa hypothetical protein | |||
| plasmid pMTY13926_NA1 | ||||
| 49710 | 76 aa hypothetical protein | |||
| 49720 | M | M.Ecos9ORF25140P (100% identity) | GATC | M.Eco13926ORF49720P |
| 49730 | 269 aa hypothetical protein | |||
| plasmid pMTY13926_NA2 | ||||
| 50030 | 308 aa hypothetical protein | |||
| 50040 | M | M.Kpn121ORF28445P (100% identity) | M.Eco13926ORF50040P | |
| 50050 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 31300 | 579 aa hypothetical protein | |||
| 31310 | R | EcosS9McrCP (100% identity) | Eco13926McrCP | |
| 31320 | R | EcosS3McrBP (100% identity) | Eco13926McrBP | |
| 31330 | 47 aa hypothetical protein | |||
| 31990 | DNA methyltransferase | |||
| 32000 | R | Ecou021MrrP (100% identity) | Eco13926MrrP | |
| 32010 | membrane protein | |||