Escherichia coli TUM9868 |
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Putative Escherichia coli TUM9868 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 4,766,183 bp | AP026507 |
| plasmid pMTY9868_IncHI2: | 235,972 bp | AP026508 |
| plasmid pMTY9868_IncN: | 48,260 bp | AP026509 |
REBASE acronym: EcoM9868
Org_num: 60412
All begin TUM9868_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 38810 | restriction methylase | |||
| 38820 | M | M.EcoMB20ORF19675P (100% identity) | M.EcoM9868ORF38820P | |
| 38830 | S | S.EcoYPE3ORF20380P (15% identity) | S1.EcoM9868ORF38820P | |
| 38850 | IS2 repressor TnpA | |||
| 38860 | transposase InsE for insertion sequence IS3D | |||
| 38870 | transposase | |||
| 38880 | S | S.Eco9868ORF20015P (100% identity) | S2.EcoM9868ORF38820P | |
| 38890 | R | Eco9868ORF20015P (100% identity) | EcoM9868ORF38820P | |
| 38900 | oxidoreductase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3270 | cell division protein DamX | |||
| 3280 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoM9868DamP |
| 3290 | ribulose-phosphate 3-epimerase | |||
| 4440 | acrEF/envCD operon repressor | |||
| 4450 | M | M.Eco9868ORF2280P (100% identity) | ATGCAT | M.EcoM9868ORF4450P |
| 4460 | DNA-binding protein Fis | |||
| 17200 | 231 aa hypothetical protein | |||
| 17210 | M | M.Eco9868DcmP (100% identity) | CCWGG | M.EcoM9868DcmP |
| 17220 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoM9868DcmP |
| 17230 | multidrug transporter | |||
| 38770 | 216 aa hypothetical protein | |||
| 38780 | R | SflFF17ORF19275P (100% identity) | EcoM9868ORF38780P | |
| 38790 | mcrBC 5-methylcytosine restriction system | |||
| plasmid pMTY9868_IncHI2 | ||||
| 46130 | 55 aa hypothetical protein | |||
| ??? | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoM9868ORF46140P |
| 46160 | nuclease | |||
| 47270 | DNA-binding protein | |||
| ??? | M | M.YpsF1ORFDP (100% identity) | GATC | M.EcoM9868ORF47280P |
| 47290 | 85 aa hypothetical protein | |||
| plasmid pMTY9868_IncN | ||||
| 47420 | IS6 family transposase | |||
| 47430 | R | YpsR1ORFAP (99% identity) | CCWGG | EcoM9868ORF47440P |
| 47440 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoM9868ORF47440P |
| 47450 | 88 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 34350 | 97 aa hypothetical protein | |||
| 34360 | R | Ecos164ORF17750P (100% identity) | ACCACC | EcoM9868ORF34370P |
| 34370 | M | M.Ecos164ORF17750P (100% identity) | ACCACC | M.EcoM9868ORF34370P |
| 34380 | serine protease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25840 | 54 aa hypothetical protein | |||
| 25850 | R | EcoSC487ORFBP (100% identity) | YCGR | EcoM9868ORF25850P |
| 25860 | serine recombinase PinE | |||
| 38780 | restriction endonuclease | |||
| 38790 | R | EcoYPE3McrCP (100% identity) | EcoM9868McrCP | |
| 38800 | R | EcoYPE3McrBP (100% identity) | EcoM9868McrBP | |
| 38810 | restriction methylase | |||