Escherichia coli TUM9812 |
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Putative Escherichia coli TUM9812 RM systems
Ref: Ikegaya,K. et al. unpublished
REBASE ref # 34910
| Sequence length: | GenBank #: | |
| Chromosome: | 5,096,614 bp | AP026503 |
| plasmid pMTY9812_IncN: | 48,249 bp | AP026506 |
| plasmid pMTY9812_NA1: | 66,878 bp | AP026505 |
| plasmid pMTY9812_p0111: | 93,747 bp | AP026504 |
REBASE acronym: EcoM9812
Org_num: 60411
All begin TUM9812_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11260 | 125 aa hypothetical protein | |||
| 11270 | R | Eco9812ORF5825P (100% identity) | EcoM9812ORF11290P | |
| 11280 | S | S.EfeEF31ORF5230P (100% identity) | S.EcoM9812ORF11290P | |
| 11290 | M | M.EfeEF31ORF5230P (100% identity) | M.EcoM9812ORF11290P | |
| 11300 | integrase | |||
| 31000 | 81 aa hypothetical protein | |||
| 31010 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoM9812ORF31010P |
| 31020 | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S.EcoM9812ORF31010P |
| 31030 | 218 aa hypothetical protein | |||
| 31040 | 355 aa hypothetical protein | |||
| 31050 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoM9812ORF31010P |
| 31060 | metal-dependent hydrolase | |||
| plasmid pMTY9812_p0111 | ||||
| 50550 | 73 aa hypothetical protein | |||
| 50560 | M | M.EcoPSS10ORF26960P (100% identity) | M.EcoM9812ORF50560P | |
| 50570 | S | S.Eco9812ORF26210P (100% identity) | S.EcoM9812ORF50560P | |
| 50580 | R | EcoPK8277ORF23015P (100% identity) | EcoM9812ORF50560P | |
| 50590 | 168 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4530 | acrEF/envCD operon repressor | |||
| 4540 | M | M.EcoC1016ORF3100P (100% identity) | ATGCAT | M.EcoM9812ORF4540P |
| 4550 | DNA-binding protein Fis | |||
| 18340 | 231 aa hypothetical protein | |||
| 18350 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoM9812DcmP |
| 18360 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoM9812DcmP |
| 18370 | multidrug transporter | |||
| 20020 | 65 aa hypothetical protein | |||
| 20030 | M | M.Eco9812ORF10335P (100% identity) | M.EcoM9812ORF20030P | |
| 20040 | tellurite resistance protein | |||
| 23540 | 65 aa hypothetical protein | |||
| 23550 | M | M.Eco9812ORF12175P (100% identity) | M.EcoM9812ORF23550P | |
| 23560 | membrane protein | |||
| 25770 | membrane protein | |||
| 25780 | M | M.Eco9812ORF13330P (100% identity) | M.EcoM9812ORF25780P | |
| 25790 | 65 aa hypothetical protein | |||
| 27740 | membrane protein | |||
| 27750 | M | M.EcoM9812ORF32200P (100% identity) | M.EcoM9812ORF27750P | |
| 27760 | 65 aa hypothetical protein | |||
| 29480 | phage holin, lambda family protein | |||
| 29490 | M | M.Eco9812ORF15250P (100% identity) | M.EcoM9812ORF29490P | |
| 29500 | 67 aa hypothetical protein | |||
| 32190 | membrane protein | |||
| 32200 | M | M.EcoM9812ORF27750P (100% identity) | M.EcoM9812ORF32200P | |
| 32210 | 65 aa hypothetical protein | |||
| 34140 | replication endonuclease from | |||
| 34150 | M | M.SflP099ORF15630P (100% identity) | GATC | M.EcoM9812ORF34150P |
| 34160 | 75 aa hypothetical protein | |||
| 35160 | phage holin, lambda family protein | |||
| 35170 | M | M.Eco9812ORF18150P (100% identity) | M.EcoM9812ORF35170P | |
| 35180 | 64 aa hypothetical protein | |||
| plasmid pMTY9812_IncN | ||||
| 51680 | IS6 family transposase | |||
| 51690 | R | YpsR1ORFAP (100% identity) | CCWGG | EcoM9812ORF51700P |
| 51700 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoM9812ORF51700P |
| 51710 | 88 aa hypothetical protein | |||
| plasmid pMTY9812_NA1 | ||||
| 51480 | 73 aa hypothetical protein | |||
| 51490 | M | M.Eco9812ORF26725P (100% identity) | M.EcoM9812ORF51490P | |
| 51500 | 307 aa hypothetical protein | |||
| plasmid pMTY9812_p0111 | ||||
| 50080 | IS4 family transposase | |||
| 50090 | R | SflFF67ORF22305P (100% identity) | GCWGC | EcoM9812ORF50090P |
| 50100 | 62 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 29170 | repressor TnpA | |||
| 29180 | R | Ecos32ORF19975P (92% identity) | EcoM9812ORF29180P | |
| 29190 | serine recombinase PinE | |||