Escherichia coli EC21GDE043 |
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Putative Escherichia coli EC21GDE043 RM systems
Ref: Huang,Y. et al. unpublished
REBASE ref # 34836
| Sequence length: | GenBank #: | |
| Chromosome: | 4,932,147 bp | CP099721 |
| plasmid pGDE043-mcr1: | 260,179 bp | CP099722 |
REBASE acronym: EcoDE043
Org_num: 60100
All begin NH569_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3390 | transposase domain-containing protein | |||
| 3395 | M | M.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | M.EcoDE043ORF3395P |
| 3400 | AAA family ATPase | |||
| 3405 | S | S2.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | S.EcoDE043ORF3395P |
| 3410 | R | SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | EcoDE043ORF3395P |
| 3415 | IS3 family transposase | |||
| 20215 | 322 aa hypothetical protein | |||
| 20220 | R | SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | EcoDE043ORF20225P |
| 20225 | M | M.SspS13ORF3945P (100% identity) | AAGNNNNNNNRTDCC | M.EcoDE043ORF20225P |
| 20230 | S | S.SflC32ORFCP (100% identity) | AAGNNNNNNNRTDCC | S.EcoDE043ORF20225P |
| 20235 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1725 | cell division protein DamX | |||
| 1730 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoDE043DamP |
| 1735 | ribulose-phosphate 3-epimerase | |||
| 2325 | DUF2556 family protein | |||
| 2330 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoDE043ORF2330P |
| 2335 | DNA-binding transcriptional regulator Fis | |||
| 9900 | phosphohydrolase | |||
| 9905 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.EcoDE043DcmP |
| 9910 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.EcoDE043DcmP |
| 9915 | drug/metabolite exporter YedA | |||
| 20600 | helix-turn-helix domain-containing protein | |||
| 20605 | M | M.KaeCRE8ORF15605P (100% identity) | M.EcoDE043ORF20605P | |
| 20610 | 71 aa hypothetical protein | |||
| plasmid pGDE043-mcr1 | ||||
| 24740 | 55 aa hypothetical protein | |||
| 24745 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoDE043ORF24745P |
| 24750 | thermonuclease family protein | |||
| 25380 | 48 aa hypothetical protein | |||
| 25385 | M | M.YpsF1ORFBP (100% identity) | M.EcoDE043ORF25385P | |
| 25390 | 202 aa hypothetical protein | |||
| 25505 | DNA-binding protein | |||
| 25510 | M | M.YpsF1ORFDP (95% identity) | M.EcoDE043ORF25510P | |
| 25515 | 284 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20235 | endoribonuclease SymE | |||
| ??? | R | Ecos137GmrSDP (100% identity) | EcoDE043GmrSDP | |
| 20250 | Rpn family recombination-promoting | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14110 | NinE family protein | |||
| 14115 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoDE043ORF14115P |
| 14120 | recombination protein NinB | |||