Putative Chlorobium phaeobacteroides BS1 RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 10671
Complete sequence: 2,736,403 bp
GenBank #: CP001101 (NC_010831)
REBASE acronym: CphB
Org_num: 4402
All begin Cphamn1_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
332 | short-chain dehydrogenase/reductase SDR | |||
333 | M | M.PaeDORF306P (91% identity) | M.CphBORF333P | |
334 | S | S2.Twi6702ORF3441P (44% identity) | S.CphBORF333P | |
335 | 591 aa conserved hypothetical protein | |||
336 | Piwi domain protein | |||
337 | R | PaeDORF306P (89% identity) | CphBORF333P | |
338 | protein of unknown function DUF45 | |||
??? | adenine-specific DNA-methyltransferase | |||
749 | R | MbaWORF3703P (39% identity) | CphBORF751P | |
750 | S | S.AspALC3ORF11460P (44% identity) | S.CphBORF751P | |
751 | M | M.NspENR4ORF968P (55% identity) | M.CphBORF751P | |
752 | 203 aa conserved hypothetical protein | |||
2542 | protein of unknown function DUF45 | |||
2543 | R | PspZM2ORF2640P (85% identity) | CphBORF2550P | |
2544 | 127 aa conserved hypothetical protein | |||
2545 | filamentation induced by cAMP protein Fic | |||
2546 | 277 aa conserved hypothetical protein | |||
2547 | 77 aa conserved hypothetical protein | |||
2548 | S | S.Mps15ORF2244P (47% identity) | S1.CphBORF2550P | |
2549 | 279 aa conserved hypothetical protein | |||
2550 | M | M.GsuPLORF8925P (88% identity) | M.CphBORF2550P | |
2551 | 133 aa conserved hypothetical protein | |||
2552 | S | S2.GsuPLORF8925P (67% identity) | S2.CphBORF2550P | |
2553 | 77 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
40 | sodium:neurotransmitter symporter | |||
41 | M | M.Psp1101ORF265P (83% identity) | CTAG | M.CphBORF40P |
42 | R | PspGSB1ORF360P (57% identity) | CTAG | CphBORF40P |
43 | transposase IS4 family protein | |||
116 | pseudogene | |||
??? | M | M.GbaPX52ORF3096P (63% identity) | CTCGAG | M.CphBORF117P |
??? | R | Lil3055ORFIP (48% identity) | CTCGAG | CphBORF117P |
119 | pseudogene | |||
744 | 932 aa conserved hypothetical protein, putative DNA | |||
745 | RM | AcrJFORF2421P (80% identity) | CphBORF745P | |
746 | 350 aa conserved hypothetical protein | |||
746 | 350 aa conserved hypothetical protein | |||
??? | RM | CteTORF1159P (53% identity) | CphBORF747P | |
749 | type III restriction protein res subunit | |||
872 | protein of unknown function DUF86 | |||
873 | R | PmeK22ORF707P (73% identity) | CphBORF874P | |
874 | M | M.PmeK22ORF707P (63% identity) | M.CphBORF874P | |
876 | pseudogene | |||
883 | IS1380 family transposase | |||
884 | RM | Cph266ORF1300P (85% identity) | CphBORF884P | |
885 | helicase-related protein | |||
1060 | nitrogenase-associated protein | |||
1062 | M | M.Cfe13031ORF340P (73% identity) | CCCGGG | M.CphBI |
1063 | R | Cph266ORF2524P (73% identity) | CCCGGG | CphBI |
1064 | pentapeptide repeat protein | |||
1156 | 465 aa conserved hypothetical protein | |||
1157 | M | M.Mda10076ORF14160P (85% identity) | GAATTC | M.CphBORF1157P |
1158 | R | Mda10076ORF14170P (90% identity) | GAATTC | CphBORF1157P |
1159 | 342 aa conserved hypothetical protein | |||
1245 | 109 aa hypothetical protein | |||
1246 | M | M.Cli245ORF789P (84% identity) | CAGCTG | M.CphBORF1246P |
1247 | R | Cph266ORF1518P (72% identity) | CAGCTG | CphBORF1246P |
1248 | 59 aa hypothetical protein | |||
1411 | HpcH/HpaI aldolase | |||
1412 | V | V.DdeEORF12855P (61% identity) | V.CphBORF1413P | |
1413 | M | M.DdeEORF12855P (75% identity) | M.CphBORF1413P | |
1414 | 635 aa conserved hypothetical protein | |||
1676 | PglZ domain protein | |||
1677 | RM | AspSHORF9255P (53% identity) | CphBORF1677P | |
1678 | 174 aa conserved hypothetical protein | |||
2495 | ATPase (AAA+ superfamily)-like protein | |||
2496 | M | M.CliFORF3910P (87% identity) | M.CphBORF2496P | |
2497 | protein of unknown function DUF1016 | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
704 | 465 aa conserved hypothetical protein | |||
705 | M | M.DspX2ORF1802P (48% identity) | M.CphBORF705P | |
706 | protein of unknown function DUF1016 | |||
707 | R | CliFORF9615P (94% identity) | CphBORF705P | |
708 | 443 aa conserved hypothetical cytosolic protein | |||
1147 | 212 aa conserved hypothetical protein | |||
1148 | M | M.EadM828ORFIP (55% identity) | M.CphBORF1148P | |
1149 | R | Dli5ac10ORF21590P (87% identity) | CphBORF1148P | |
1150 | protein of unknown function DUF262 | |||
2420 | 192 aa conserved hypothetical protein | |||
2421 | R | PspHL130ORF10575P (94% identity) | CphBORF2417P | |
2422 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
1149 | type III restriction protein res subunit | |||
1150 | R | FspN2155GmrSDP (80% identity) | CphBGmrSDP | |
1151 | 743 aa conserved hypothetical protein |