Silicibacter species TM1040 |
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Putative Silicibacter species TM1040 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 9656
| Sequence length: | GenBank #: | |
| Chromosome: | 3,200,938 bp | CP000377 (NC_008044) |
| mega plasmid: | 821,788 bp | CP000376 (NC_008043) |
REBASE acronym: SspTM
Org_num: 4428
All begin TM1040_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| mega plasmid | ||||
| 3535 | Integrase catalytic region | |||
| 3537 | R | MalKU6BORF47150P (92% identity) | SspTMORF3541P | |
| 3538 | 699 aa Hypothetical protein HI1375 | |||
| 3539 | predicted protein | |||
| 3540 | S | S.FspPG104ORF8870P (35% identity) | S.SspTMORF3541P | |
| 3541 | M | M.MalKU6BORF47150P (95% identity) | M.SspTMORF3541P | |
| 3542 | Tyrosine recombinase xerC | |||
| 3548 | 242 aa hypothetical protein | |||
| 3549 | R | SspW43ORF3965P (69% identity) | SspTMORF3549P | |
| 3550 | S | S.Rle2012ORFCP (42% identity) | S.SspTMORF3549P | |
| 3551 | M | M.PpiS26ORF3330P (87% identity) | M.SspTMORF3549P | |
| 3552 | 191 aa Hypothetical 378 kDa protein in PTP-CTL | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1586 | alpha/beta hydrolase fold | |||
| 1587 | M | M.Tsp171ORFAP (76% identity) | TGATCA | M.SspTMORF1587P |
| 1588 | Outer membrane autotransporter barrel | |||
| 1678 | 118 aa Hypothetical protein PD1345 | |||
| 1679 | M | M.LspM523ORF6795P (62% identity) | GATC | M.SspTMORF1679P |
| 1680 | 100 aa hypothetical protein | |||
| 1690 | 125 aa unknown protein | |||
| 1691 | M | M1.Bsp2280ORF11815P (62% identity) | M.SspTMORF1691P | |
| 1692 | 348 aa hypothetical protein | |||
| 2648 | adenylate/guanylate cyclase | |||
| 2649 | M | M.Tsp171ORFBP (98% identity) | GANTC | M.SspTMORF2649P |
| 2650 | RNase HII | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| mega plasmid | ||||
| 3537 | type I restriction-modification system | |||
| 3538 | R | OspHL35GmrSDP (78% identity) | SspTMGmrSDP | |
| 3539 | predicted protein | |||