Escherichia coli C288 |
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Putative Escherichia coli C288 RM systems
Ref: DelaFuente,J. et al. unpublished
REBASE ref # 34581
| Sequence length: | GenBank #: | |
| Chromosome: | 4,735,021 bp | CP097430 |
| plasmid unnamed1: | 87,915 bp | CP097431 |
| plasmid unnamed2: | 70,092 bp | CP097432 |
REBASE acronym: EcoC288
Org_num: 58617
All begin M8Y68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid unnamed2 | ||||
| 23925 | 62 aa hypothetical protein | |||
| 23535 | R | SenS1545ORF24780P (100% identity) | EcoC288ORF23540P | |
| 23540 | M | M.SenS1545ORF24780P (100% identity) | M.EcoC288ORF23540P | |
| 23545 | chromosome segregation protein SMC | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1655 | cell division protein DamX | |||
| 1660 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC288DamP |
| 1665 | ribulose-phosphate 3-epimerase | |||
| 2285 | DUF2556 family protein | |||
| 2290 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoC288ORF2290P |
| 2295 | DNA-binding transcriptional regulator Fis | |||
| 8845 | phosphohydrolase | |||
| 8850 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoC288DcmP |
| 8855 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoC288DcmP |
| 8860 | drug/metabolite exporter YedA | |||
| 14970 | replication endonuclease | |||
| 14975 | M | M.SflN92ORF14970P (100% identity) | GATC | M.EcoC288ORF14975P |
| 14980 | TraR/DksA family transcriptional regulator | |||
| 17960 | phage lysis protein EssD | |||
| 17965 | M | M.Sso63633ORF22290P (100% identity) | M.EcoC288ORF17965P | |
| 17970 | 95 aa hypothetical protein | |||
| 18005 | LexA family transcriptional regulator | |||
| 18010 | M | M.SflFF87ORF17870P (100% identity) | GATC | M.EcoC288ORF18010P |
| 18015 | PerC family transcriptional regulator | |||
| 19810 | HNH endonuclease | |||
| 19815 | R | SflSTLE4ORF19250P (100% identity) | EcoC288ORF19815P | |
| 19820 | McrC family protein | |||
| plasmid unnamed1 | ||||
| 23420 | 101 aa hypothetical protein | |||
| 23425 | M | M.Sfl712783ORFFP (100% identity) | M.EcoC288ORF23425P | |
| 23430 | 73 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 23615 | 97 aa hypothetical protein | |||
| 23620 | M | M.EcoC289ORF23675P (100% identity) | M.EcoC288ORF23620P | |
| 23625 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8750 | shufflon system plasmid conjugative transfer | |||
| 8755 | R | EcoC289ORF8760P (100% identity) | CCGAG | EcoC288ORF8760P |
| 8760 | M | M.EcoC289ORF8760P (100% identity) | CCGAG | M.EcoC288ORF8760P |
| 8765 | SpnT protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19815 | HNH endonuclease | |||
| 19820 | R | SflSTLE4McrCP (100% identity) | EcoC288McrCP | |
| 19825 | R | SflSTLE4McrBP (100% identity) | EcoC288McrBP | |
| 19830 | DUF4942 domain-containing protein | |||