Paracoccus denitrificans DYTN-1 |
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Putative Paracoccus denitrificans DYTN-1 RM systems
Ref: Yu,D. et al. Wei Sheng Wu Xue Bao (2022) In press
REBASE ref # 34454
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,853,092 bp | CP096593 |
| chromosome 2: | 1,730,123 bp | CP096594 |
REBASE acronym: PdeDYTN1
Org_num: 57984
All begin M0K93_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1305 | 138 aa hypothetical protein | |||
| 1310 | M | M.Pde3ORF10130P (91% identity) | M.PdeDYTN1ORF1310P | |
| 1315 | 96 aa hypothetical protein | |||
| 1385 | IS110 family transposase | |||
| ??? | M | M.Pde3ORF10050P (100% identity) | M.PdeDYTN1ORF1390P | |
| 1395 | S26 family signal peptidase | |||
| 2025 | 144 aa hypothetical protein | |||
| 2030 | M | M2.Pde3ORF9400P (100% identity) | M1.PdeDYTN1ORF2030P | |
| 2035 | M | M1.Pde3ORF9400P (100% identity) | M2.PdeDYTN1ORF2030P | |
| 2040 | type II toxin-antitoxin system HigB family | |||
| 2440 | 139 aa hypothetical protein | |||
| 2445 | M | M.Pde3ORF8995P (100% identity) | M.PdeDYTN1ORF2445P | |
| 2450 | DNA polymerase III subunit beta | |||
| 8435 | DUF2326 domain-containing protein | |||
| 8440 | RM | Pde3ORF3765P (100% identity) | PdeDYTN1ORF8440P | |
| 8445 | DEAD/DEAH box helicase | |||
| 11235 | IS5-like element IS1248A family transposase | |||
| ??? | R | Pde3ORF200P (100% identity) | PdeDYTN1ORF11245P | |
| 11245 | M | M.Pde3ORF200P (100% identity) | M1.PdeDYTN1ORF11245P | |
| 11250 | V | V.Pde3ORF200P (100% identity) | V.PdeDYTN1ORF11245P | |
| 11255 | 74 aa hypothetical protein | |||
| 11260 | terminase large subunit | |||
| 11265 | phage terminase small subunit P27 family | |||
| 11270 | cold-shock protein | |||
| 11275 | DUF982 domain-containing protein | |||
| 11280 | 52 aa hypothetical protein | |||
| 11285 | 74 aa hypothetical protein | |||
| 11290 | M | M.Pde3ORF160P (100% identity) | M2.PdeDYTN1ORF11245P | |
| 11295 | HNH endonuclease | |||
| 11440 | GSCFA domain-containing protein | |||
| 11445 | M | M.PdeR1ORF2250P (100% identity) | GANTC | M.PdeDYTN1ORF11445P |
| 11450 | ribonuclease HII | |||
| chromosome 2 | ||||
| 16170 | 138 aa hypothetical protein | |||
| 16175 | M | M.Pde3ORF22060P (91% identity) | M.PdeDYTN1ORF16175P | |
| 16180 | 100 aa hypothetical protein | |||
| 16255 | DUF2840 domain-containing protein | |||
| 16260 | M | M.Pde3ORF22145P (100% identity) | YGGCCR | M.PdeDYTN1ORF16260P |
| 16265 | S26 family signal peptidase | |||
| 17120 | 138 aa hypothetical protein | |||
| 17125 | M | M.Pde3ORF23000P (100% identity) | M.PdeDYTN1ORF17125P | |
| 17130 | 96 aa hypothetical protein | |||
| 17195 | DUF2840 domain-containing protein | |||
| 17200 | M | M.Pde3ORF14485P (100% identity) | YGGCCR | M.PdeDYTN1ORF17200P |
| 17205 | S26 family signal peptidase | |||
| 19625 | zinc ribbon domain-containing protein | |||
| 19630 | C | C.Pde3ORF16920P (100% identity) | C.PdeDYTN1ORF19635P | |
| 19635 | M | M.Pde3ORF16920P (100% identity) | M.PdeDYTN1ORF19635P | |
| 19640 | R | Pde3ORF16920P (100% identity) | PdeDYTN1ORF19635P | |
| 19645 | 443 aa hypothetical protein | |||