Helicobacter pylori Hpfe0003 |
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Putative Helicobacter pylori Hpfe0003 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,564,612 bp
GenBank #: CP094171
REBASE acronym: Hpyfe3
Org_num: 57267
All begin MPG20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 510 | formyltetrahydrofolate deformylase | |||
| 515 | S | S.HpyME09IX (63% identity) | S.Hpyfe3ORF515P | |
| 520 | 59 aa hypothetical protein | |||
| 3000 | DNA cytosine methyltransferase | |||
| 3005 | M | M.Hpy334ORFSP (96% identity) | CAANNNNNNCTT | M.Hpyfe3ORF3005P |
| 3010 | S | S.Hpyfe95ORF4290P (95% identity) | CAANNNNNNCTT | S.Hpyfe3ORF3005P |
| 3015 | R | Hpyfe19ORF2995P (96% identity) | CAANNNNNNCTT | Hpyfe3ORF3005P |
| 3020 | hydroxyethylthiazole kinase | |||
| 3295 | cadmium-translocating P-type ATPase | |||
| 3300 | S | S.HpyOK310ORFTP (96% identity) | CCANNNNNNRTC | S.Hpyfe3ORF3300P |
| 3305 | outer membrane beta-barrel protein HofF | |||
| 4885 | type I restriction endonuclease | |||
| 4890 | R | Hpyfe118ORF5095P (94% identity) | CCANNNNNNTTA | Hpyfe3ORF4895P |
| 4895 | M | M.Hpyfe125ORF2620P (97% identity) | CCANNNNNNTTA | M.Hpyfe3ORF4895P |
| 4900 | S | S.HpyMTT79ORFUP (99% identity) | CCANNNNNNTTA | S.Hpyfe3ORF4895P |
| 4910 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyL015XV (88% identity) | Hpyfe3ORF55P | |
| 60 | CLPTM1 family protein | |||
| 145 | outer membrane protein | |||
| 150 | R | Hpyfe49ORF135P (96% identity) | CCATC | Hpyfe3ORF155P |
| 155 | M | M1.Hpyfe93ORF140P (99% identity) | CCATC | M1.Hpyfe3ORF155P |
| 160 | M | M2.Hpyfe49ORF135P (100% identity) | CCATC | M2.Hpyfe3ORF155P |
| 165 | LptF/LptG family permease | |||
| 290 | ComF family protein | |||
| 295 | RM | HpyQ55ORFTP (99% identity) | CYANNNNNNTTC | Hpyfe3ORF295P |
| 300 | S | S.HpyLI35ORF7105P (93% identity) | S.Hpyfe3ORF295P | |
| 305 | DNA polymerase I | |||
| 1425 | IceA2 protein | |||
| 1430 | M | M.HpyTW22I (99% identity) | CATG | M.Hpyfe3ORF1430P |
| 1435 | HAD family hydrolase | |||
| 1885 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1890 | M | M.Hpyfe123ORF1860P (99% identity) | GCGC | M.Hpyfe3ORF1890P |
| 1895 | 144 aa hypothetical protein | |||
| 2060 | Laminin subunit alpha-2 precursor | |||
| 2065 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe3ORF2070P |
| 2070 | M | M.HpyT030XIII (100% identity) | TCNNGA | M.Hpyfe3ORF2070P |
| 2075 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2720 | ATP-dependent helicase | |||
| 2725 | M | M.HpyQ56ORFMP (95% identity) | GTNNAC | M.Hpyfe3ORF2725P |
| 2730 | R | HpyOK304ORFXP (95% identity) | GTNNAC | Hpyfe3ORF2725P |
| 2735 | flagellar hook protein FlgE | |||
| 2990 | phosphatase PAP2 family protein | |||
| 2995 | R | HpyK118ORF4345P (98% identity) | GGCC | Hpyfe3ORF3000P |
| 3000 | M | M.HpyMA23ORF5945P (99% identity) | GGCC | M.Hpyfe3ORF3000P |
| 3005 | type I restriction-modification system subunit | |||
| 3825 | (Fe-S)-binding protein | |||
| 3830 | RM | Hpyfe36ORF3825P (90% identity) | Hpyfe3ORF3830P | |
| 3835 | 62 aa hypothetical protein | |||
| 4685 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4690 | R | HpyGC26ORFB1P (94% identity) | GTAC | Hpyfe3ORF4695P |
| 4695 | M | M.Hpyfe124ORF2920P (99% identity) | GTAC | M.Hpyfe3ORF4695P |
| 4700 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4785 | catalase | |||
| 4790 | R | Hpyfe29ORF4850P (96% identity) | ACNGT | Hpyfe3ORF4795P |
| 4795 | M | M.Hpyfe118ORF4995P (98% identity) | ACNGT | M.Hpyfe3ORF4795P |
| 4800 | translational GTPase TypA | |||
| 4805 | lipopolysaccharide heptosyltransferase family | |||
| 4810 | M | M.HpyTW06ORF2295P (97% identity) | ATTAAT | M.Hpyfe3ORF4810P |
| 4815 | Hop family outer membrane protein HopJ/HopK | |||
| 5525 | 125 aa hypothetical protein | |||
| 5530 | M | M.Hpyfe1ORF5730P (99% identity) | CTNAG | M.Hpyfe3ORF5530P |
| 5535 | R | HpyK023VP (98% identity) | CTNAG | Hpyfe3ORF5530P |
| 5540 | polysaccharide deacetylase | |||
| 5775 | AAA family ATPase | |||
| 5780 | M | M.Hpyfe127ORF5870P (99% identity) | CCGG | M.Hpyfe3ORF5780P |
| 5785 | R | HpyTW19IIP (96% identity) | CCGG | Hpyfe3ORF5780P |
| 5790 | 204 aa hypothetical protein | |||
| 5790 | 204 aa hypothetical protein | |||
| 5795 | M | M.HpyV001XI (98% identity) | TCGA | M.Hpyfe3ORF5795P |
| 5800 | exodeoxyribonuclease VII large subunit | |||
| 6585 | alpha-1,2-fucosyltransferase | |||
| 6590 | M | M.HpyMA15XII (98% identity) | GATC | M.Hpyfe3ORF6590P |
| 6595 | R | HpySG04IXP (96% identity) | GATC | Hpyfe3ORF6590P |
| 6605 | ACP S-malonyltransferase | |||
| 6770 | DNA cytosine methyltransferase | |||
| 6775 | R | Hpyfe49ORF6980P (97% identity) | CCTC | Hpyfe3ORF6780P |
| 6780 | M | M2.HpySG12IVP (99% identity) | CCTC | M1.Hpyfe3ORF6780P |
| 6785 | M | M2.Hpyfe103ORF6940P (99% identity) | CCTC | M2.Hpyfe3ORF6780P |
| 6790 | outer membrane protein | |||
| 6830 | S41 family peptidase | |||
| 6835 | RM | HpyOK06ORFIP (89% identity) | Hpyfe3ORF6835P | |
| 6840 | carboxylating nicotinate-nucleotide | |||
| 6890 | copper response regulator transcription factor | |||
| 6895 | R | HpyBS21ORF735P (98% identity) | GAAGA | Hpyfe3ORF6900P |
| 6900 | M | M1.Hpy12823VI (98% identity) | GAAGA | M1.Hpyfe3ORF6900P |
| 6905 | M | M.HpyPE11III (99% identity) | GAAGA | M2.Hpyfe3ORF6900P |
| 6910 | EcoRV family type II restriction endonuclease | |||
| 6910 | EcoRV family type II restriction endonuclease | |||
| 6915 | M | M.Hpyfe11ORF7200P (98% identity) | GATATC | M.Hpyfe3ORF6915P |
| 6920 | site-specific DNA-methyltransferase | |||
| 7380 | 0 aa hypothetical protein | |||
| 7385 | R | Hpyfe19ORF7540P (66% identity) | TGCA | Hpyfe3ORF7390P |
| 7390 | M | M.HpyMA20VII (99% identity) | TGCA | M.Hpyfe3ORF7390P |
| 7395 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyMKM5ORF1447P (97% identity) | M.Hpyfe3ORF40P | |
| 50 | R | Hpy1100ORFTP (97% identity) | Hpyfe3ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 645 | biotin synthase | |||
| 650 | R | HpyJ002ORF6525P (89% identity) | Hpyfe3ORF655P | |
| 655 | M | M.Hpyfe28ORF635P (97% identity) | M.Hpyfe3ORF655P | |
| 660 | DNA/RNA non-specific endonuclease | |||
| 6915 | Dam family site-specific | |||
| 6920 | M | M.HpyPF16XVII (98% identity) | M.Hpyfe3ORF6920P | |
| 6925 | R | Hpyfe102ORF7065P (95% identity) | Hpyfe3ORF6920P | |
| 6930 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4060 | NAD(P)H-dependent oxidoreductase | |||
| 4065 | R | Hpy4105GmrSDP (95% identity) | Hpyfe3GmrSDP | |
| 4070 | sel1 repeat family protein | |||
| 4645 | 50S ribosomal protein L9 | |||
| 4650 | R | Hpyfe49GmrSD2P (93% identity) | Hpyfe3GmrSD2P | |
| 4655 | type I glutamate--ammonia ligase | |||