Helicobacter pylori Hpfe019 |
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Putative Helicobacter pylori Hpfe019 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,652,426 bp
GenBank #: CP094151
REBASE acronym: Hpyfe19
Org_num: 57281
All begin MPG81_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2990 | phosphatase PAP2 family protein | |||
| 2995 | M | M.HpySG05ORF2575P (96% identity) | CAYNNNNNNCTT | M.Hpyfe19ORF2995P |
| 3000 | S | S.Hpyfe29ORF3355P (66% identity) | CAYNNNNNNCTT | S.Hpyfe19ORF2995P |
| 3005 | R | Hpyfe81ORF2925P (97% identity) | CAYNNNNNNCTT | Hpyfe19ORF2995P |
| 3010 | hydroxyethylthiazole kinase | |||
| 3300 | cadmium-translocating P-type ATPase | |||
| 3305 | S | S.HpyV003XI (94% identity) | S.Hpyfe19ORF3305P | |
| 3310 | outer membrane beta-barrel protein HofF | |||
| 7825 | type I restriction endonuclease | |||
| 7830 | M | M.Hpyfe120ORF7670P (97% identity) | CRTANNNNNNNTG | M.Hpyfe19ORF7830P |
| 7835 | S | S.Hpy66ORF85P (98% identity) | CRTANNNNNNNTG | S.Hpyfe19ORF7830P |
| 7840 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | Hpyfe56ORF50P (93% identity) | Hpyfe19ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | Hpy1838CIVP (97% identity) | CCATC | Hpyfe19ORF135P |
| 135 | M | M1.Hpyfe55ORF155P (100% identity) | CCATC | M1.Hpyfe19ORF135P |
| 140 | M | M1.HpyID3IV (99% identity) | CCATC | M2.Hpyfe19ORF135P |
| 145 | LptF/LptG family permease | |||
| 270 | ComF family protein | |||
| 275 | RM | HpyK052ORF6785P (99% identity) | CYANNNNNNTTC | Hpyfe19ORF275P |
| 280 | S | S.HpyU002ORF7260P (94% identity) | S.Hpyfe19ORF275P | |
| 285 | DNA polymerase I | |||
| 1415 | serine O-acetyltransferase | |||
| 1420 | R | Hpyfe76ORF1420P (83% identity) | CATG | Hpyfe19ORF1425P |
| 1425 | M | M.Hpyfe57ORF1415P (98% identity) | CATG | M.Hpyfe19ORF1425P |
| 1430 | HAD family hydrolase | |||
| 1880 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1885 | M | M.HpyK101XVI (98% identity) | GCGC | M.Hpyfe19ORF1885P |
| 1890 | 144 aa hypothetical protein | |||
| 2060 | Laminin subunit alpha-2 precursor | |||
| 2065 | R | Hpyfe85ORF2060P (99% identity) | TCNNGA | Hpyfe19ORF2070P |
| 2070 | M | M.Hpy5086ORF240P (99% identity) | TCNNGA | M.Hpyfe19ORF2070P |
| 2075 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2715 | ATP-dependent helicase | |||
| 2720 | M | M.HpyK044IX (99% identity) | GTNNAC | M.Hpyfe19ORF2720P |
| 2725 | R | Hpyfe35ORF2845P (97% identity) | GTNNAC | Hpyfe19ORF2720P |
| 2730 | flagellar hook protein FlgE | |||
| 3860 | outer membrane protein | |||
| 3865 | RM | HpyK111ORF3435P (92% identity) | Hpyfe19ORF3865P | |
| 3870 | (Fe-S)-binding protein | |||
| 4765 | catalase | |||
| 4770 | R | HpyK042ORF2340P (97% identity) | ACGT | Hpyfe19ORF4775P |
| ??? | M | M.Hpy72ORF490P (97% identity) | ACGT | M.Hpyfe19ORF4775P |
| 4780 | GIY-YIG nuclease family protein | |||
| 4775 | DNA cytosine methyltransferase | |||
| 4780 | R | Hpyfe97ORF5110P (100% identity) | ACNGT | Hpyfe19ORF4785P |
| 4785 | M | M.Hpyfe118ORF4995P (98% identity) | ACNGT | M.Hpyfe19ORF4785P |
| 4790 | translational GTPase TypA | |||
| 4795 | lipopolysaccharide heptosyltransferase family | |||
| 4800 | M | M.HpyJ026II (97% identity) | ATTAAT | M.Hpyfe19ORF4800P |
| 4805 | Hop family outer membrane protein HopJ/HopK | |||
| 5510 | 119 aa hypothetical protein | |||
| 5515 | M | M.HpyUM085ORF755P (99% identity) | CTNAG | M.Hpyfe19ORF5515P |
| 5520 | R | HpyU002VIIP (97% identity) | CTNAG | Hpyfe19ORF5515P |
| 5525 | polysaccharide deacetylase | |||
| 5755 | AAA family ATPase | |||
| 5760 | M | M.HpySG32III (99% identity) | CCGG | M.Hpyfe19ORF5760P |
| 5765 | R | HpyT027IVP (96% identity) | CCGG | Hpyfe19ORF5760P |
| 5770 | 204 aa hypothetical protein | |||
| 5770 | 204 aa hypothetical protein | |||
| 5775 | M | M.Hpyfe72ORF5775P (99% identity) | TCGA | M.Hpyfe19ORF5775P |
| 5780 | exodeoxyribonuclease VII large subunit | |||
| 6435 | ACP S-malonyltransferase | |||
| 6445 | R | HpyH137ORF7070P (96% identity) | GATC | Hpyfe19ORF6450P |
| 6450 | M | M.Hpyfe75ORF6725P (97% identity) | GATC | M.Hpyfe19ORF6450P |
| 6455 | alpha-1,2-fucosyltransferase | |||
| 6915 | sodium/proline symporter PutP | |||
| 6920 | M | M2.HpyK002XIVP (98% identity) | M1.Hpyfe19ORF6920P | |
| 6925 | M | M1.Hpybs1ORFQP (98% identity) | CCTC | M2.Hpyfe19ORF6920P |
| 6930 | agmatine deiminase | |||
| 6970 | S41 family peptidase | |||
| ??? | RM | HpyMA06ORF255P (92% identity) | Hpyfe19ORF6975P | |
| 6985 | carboxylating nicotinate-nucleotide | |||
| 7035 | copper response regulator transcription factor | |||
| 7040 | R | Hpyfe66ORF6980P (98% identity) | GAAGA | Hpyfe19ORF7045P |
| 7045 | M | M1.Hpyfe6ORF6865P (99% identity) | GAAGA | M1.Hpyfe19ORF7045P |
| 7050 | M | M2.Hpyfe66ORF6980P (99% identity) | GAAGA | M2.Hpyfe19ORF7045P |
| 7055 | site-specific DNA-methyltransferase | |||
| 7530 | 130 aa hypothetical protein | |||
| 7535 | R | Hpyfe81ORF7425P (100% identity) | TGCA | Hpyfe19ORF7540P |
| 7540 | M | M.Hpyfe33ORF7390P (99% identity) | TGCA | M.Hpyfe19ORF7540P |
| 7545 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyU011ORF7420P (97% identity) | M.Hpyfe19ORF40P | |
| 50 | R | HpyMA06ORF7425P (97% identity) | Hpyfe19ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 620 | type III restriction endonuclease subunit R | |||
| 625 | R | Hpyfe23ORF650P (96% identity) | Hpyfe19ORF630P | |
| 630 | M | M.HpyKH30ORFSP (94% identity) | M.Hpyfe19ORF630P | |
| 635 | IS607 family transposase | |||
| 3150 | ABC transporter permease/substrate-binding | |||
| 3155 | M | M.HpyF235ORFEP (97% identity) | M.Hpyfe19ORF3155P | |
| 3160 | R | Hpyfe58ORF7195P (95% identity) | Hpyfe19ORF3155P | |
| 3165 | 145 aa hypothetical protein | |||
| 7050 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyOK34ORFLP (95% identity) | M.Hpyfe19ORF7055P | |
| 7060 | R | Hpyfe19ORF3155P (89% identity) | Hpyfe19ORF7055P | |
| 7065 | transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4050 | NAD(P)H-dependent oxidoreductase | |||
| 4055 | R | HpyK046GmrSD2P (94% identity) | Hpyfe19GmrSDP | |
| 4060 | sel1 repeat family protein | |||
| 4630 | 50S ribosomal protein L9 | |||
| 4635 | R | HpyF002GmrSDP (85% identity) | Hpyfe19GmrSD2P | |
| 4640 | type I glutamate--ammonia ligase | |||