Helicobacter pylori Hpfe108 |
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Putative Helicobacter pylori Hpfe108 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,572,443 bp
GenBank #: CP094067
REBASE acronym: Hpyfe108
Org_num: 57348
All begin MPG11_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4750 | hydroxyethylthiazole kinase | |||
| 4755 | R | HpyTW18ORF4215P (97% identity) | CCANNNNNNCTT | Hpyfe108ORF4765P |
| 4760 | S | S.Hpy464ORF2800P (96% identity) | CCANNNNNNCTT | S.Hpyfe108ORF4765P |
| 4765 | M | M.HpyMA18ORF4320P (97% identity) | CCANNNNNNCTT | M.Hpyfe108ORF4765P |
| 4770 | type I restriction endonuclease | |||
| 5025 | motility associated factor glycosyltransferase | |||
| ??? | R | Hpy458ORFQP (93% identity) | Hpyfe108ORF5045P | |
| 5045 | M | M.Hpyfe10ORF5040P (100% identity) | M.Hpyfe108ORF5045P | |
| 5050 | S | S.Hpyfe10ORF5040P (99% identity) | S.Hpyfe108ORF5045P | |
| 5060 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | Hpyfe10ORF55P (99% identity) | Hpyfe108ORF55P | |
| 60 | 177 aa hypothetical protein | |||
| 1420 | serine O-acetyltransferase | |||
| 1425 | R | Hpy52NORFIP (96% identity) | CATG | Hpyfe108ORF1430P |
| 1430 | M | M.HpyHK840ORFUP (97% identity) | CATG | M.Hpyfe108ORF1430P |
| 1435 | HAD family hydrolase | |||
| 1595 | purine-nucleoside phosphorylase | |||
| 1600 | R | Hpyfe10ORF1600P (100% identity) | TCNGA | Hpyfe108ORF1605P |
| 1605 | M | M.Hpyfe10ORF1600P (100% identity) | TCNGA | M.Hpyfe108ORF1605P |
| 1610 | 76 aa hypothetical protein | |||
| 1890 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1895 | M | M.Hpyfe10ORF1890P (99% identity) | GCGC | M.Hpyfe108ORF1895P |
| 1900 | 144 aa hypothetical protein | |||
| 2070 | Laminin subunit alpha-2 precursor | |||
| 2075 | R | Hpyfe10ORF2075P (100% identity) | TCNNGA | Hpyfe108ORF2080P |
| 2080 | M | M.Hpyfe85ORF2060P (99% identity) | TCNNGA | M.Hpyfe108ORF2080P |
| 2085 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2860 | ATP-dependent helicase | |||
| 2865 | M | M.HpyCA7VI (97% identity) | GTNNAC | M.Hpyfe108ORF2865P |
| 2870 | R | Hpyfe115ORF2725P (96% identity) | GTNNAC | Hpyfe108ORF2865P |
| 2875 | flagellar hook protein FlgE | |||
| 3930 | outer membrane protein | |||
| 3935 | RM | HpyK51ORF610P (93% identity) | Hpyfe108ORF3935P | |
| 3940 | (Fe-S)-binding protein | |||
| 4920 | catalase | |||
| 4925 | R | Hpyfe10ORF4925P (100% identity) | ACGT | Hpyfe108ORF4930P |
| 4930 | M | M.Hpyfe10ORF4925P (100% identity) | ACGT | M.Hpyfe108ORF4930P |
| 4935 | GIY-YIG nuclease family protein | |||
| 4930 | DNA cytosine methyltransferase | |||
| 4935 | R | Hpyfe10ORF4935P (100% identity) | ACNGT | Hpyfe108ORF4940P |
| 4940 | M | M.Hpyfe10ORF4935P (100% identity) | ACNGT | M.Hpyfe108ORF4940P |
| 4945 | translational GTPase TypA | |||
| 4950 | lipopolysaccharide heptosyltransferase family | |||
| 4955 | M | M.Hpyfe10ORF4950P (100% identity) | ATTAAT | M.Hpyfe108ORF4955P |
| 4960 | Hop family outer membrane protein HopJ/HopK | |||
| 5920 | AAA family ATPase | |||
| 5925 | M | M.Hpyfe10ORF5925P (100% identity) | CCGG | M.Hpyfe108ORF5925P |
| 5930 | R | Hpyfe70ORF5880P (99% identity) | CCGG | Hpyfe108ORF5925P |
| 5935 | 204 aa hypothetical protein | |||
| 5935 | 204 aa hypothetical protein | |||
| 5940 | M | M.Hpyfe10ORF5940P (100% identity) | TCGA | M.Hpyfe108ORF5940P |
| 5945 | exodeoxyribonuclease VII large subunit | |||
| 6355 | pseudaminic acid synthase | |||
| 6360 | R | R1.Hpyfe10ORF6350P (99% identity) | R1.Hpyfe108ORF6360P | |
| 6365 | R | R2.Hpyfe10ORF6350P (100% identity) | R2.Hpyfe108ORF6360P | |
| 6370 | 86 aa hypothetical protein | |||
| 6760 | alpha-1,2-fucosyltransferase | |||
| 6765 | M | M.HpyK025VIII (97% identity) | GATC | M.Hpyfe108ORF6765P |
| 6770 | R | Hpyfe10ORF6760P (100% identity) | GATC | Hpyfe108ORF6765P |
| 6780 | ACP S-malonyltransferase | |||
| 6930 | sodium/proline symporter PutP | |||
| 6935 | M | M1.Hpyfe52ORF6755P (99% identity) | M1.Hpyfe108ORF6935P | |
| 6940 | M | M1.Hpy4125ORFHP (99% identity) | CCTC | M2.Hpyfe108ORF6935P |
| 6945 | agmatine deiminase | |||
| 6990 | DNA methyltransferase | |||
| 6995 | R | Hpyfe10ORF6990P (98% identity) | GANTC | Hpyfe108ORF7000P |
| 7000 | M | M.Hpyfe10ORF6990P (99% identity) | GANTC | M.Hpyfe108ORF7000P |
| 7005 | carboxylating nicotinate-nucleotide | |||
| 7525 | 107 aa hypothetical protein | |||
| 7530 | R | HpyCHN3XP (97% identity) | TGCA | Hpyfe108ORF7535P |
| 7535 | M | M.Hpyfe10ORF7530P (98% identity) | TGCA | M.Hpyfe108ORF7535P |
| 7540 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyT030ORF7100P (96% identity) | M.Hpyfe108ORF40P | |
| 50 | R | Hpyfe10ORF40P (98% identity) | Hpyfe108ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 650 | type III restriction endonuclease subunit R | |||
| 655 | R | Hpyfe10ORF650P (97% identity) | Hpyfe108ORF660P | |
| 660 | M | M.Hpyfe10ORF650P (99% identity) | M.Hpyfe108ORF660P | |
| 665 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3110 | type I glutamate--ammonia ligase | |||
| 3115 | R | Hpyfe10GmrSDP (98% identity) | Hpyfe108GmrSDP | |
| 3120 | 50S ribosomal protein L9 | |||
| 3695 | sel1 repeat family protein | |||
| 3700 | R | Hpyfe10GmrSD2P (99% identity) | Hpyfe108GmrSD2P | |
| 3705 | NAD(P)H-dependent oxidoreductase | |||