Pedobacter species Q8-18 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Pedobacter species Q8-18 RM systems
Ref: Huang,J. unpublished
REBASE ref # 24830
Complete sequence: 4,929,029 bp
GenBank #: CP087585
REBASE acronym: PspQ818
Org_num: 54836
All begin LOK61_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 8510 | Na+/H+ antiporter NhaA | |||
| ??? | R | Mgo4ORF2255P (68% identity) | PspQ818ORF8540P | |
| 8525 | S | S.Mgo4ORF2255P (59% identity) | S.PspQ818ORF8540P | |
| 8530 | 201 aa hypothetical protein | |||
| 8535 | PD-(D/E)XK nuclease family protein | |||
| 8540 | M | M.Mgo4ORF2255P (87% identity) | M.PspQ818ORF8540P | |
| 8545 | 69 aa hypothetical protein | |||
| 13120 | TonB-dependent receptor | |||
| 13125 | R | PbaG22ORF4861P (76% identity) | PspQ818ORF13165P | |
| 13130 | 112 aa hypothetical protein | |||
| 13135 | site-specific integrase | |||
| 13140 | S | S2.Ean72ORF2877P (37% identity) | S3.PspQ818ORF13165P | |
| 13145 | IS21 family transposase | |||
| 13150 | IS21-like element helper ATPase IstB | |||
| 13155 | S | S1.CkwR5ORF4860P (30% identity) | S2.PspQ818ORF13165P | |
| 13160 | S | S1.CnoFORF7720P (40% identity) | S1.PspQ818ORF13165P | |
| 13165 | M | M.Psp72III (71% identity) | M.PspQ818ORF13165P | |
| 13170 | 236 aa hypothetical protein | |||
| 13175 | JAB domain-containing protein | |||
| 13180 | sigma-70 family RNA polymerase sigma factor | |||
| 13185 | recombinase family protein | |||
| 13190 | S | S.GprSS5ORF15345P (59% identity) | S4.PspQ818ORF13165P | |
| 13195 | DUF262 domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13205 | 294 aa hypothetical protein | |||
| 13210 | M | M.BbaOmORF2190P (60% identity) | M.PspQ818ORF13210P | |
| 13215 | R | NhaLW7ORFDP (69% identity) | PspQ818ORF13210P | |
| 13220 | phage Gp37/Gp68 family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4575 | helix-turn-helix transcriptional regulator | |||
| 4580 | R | DspCY22MrrP (52% identity) | PspQ818MrrP | |
| 4585 | DNA cytosine methyltransferase | |||
| 5415 | 248 aa hypothetical protein | |||
| 5420 | R | Faq18293McrBP (24% identity) | PspQ818McrBP | |
| 5425 | R | MgiKHI28McrCP (52% identity) | PspQ818McrCP | |
| 5430 | ABC transporter ATP-binding protein | |||
| 13595 | 8-oxo-dGTP diphosphatase MutT | |||
| 13600 | R | MgiKHI28ORF13255P (68% identity) | PspQ818ORF13600P | |
| 13605 | HNH endonuclease | |||