Ref: Ravin,N.V. et al. unpublished

REBASE ref # 33918

Sequence length:GenBank #:
Chromosome: 4,343,903 bp CP091244
plasmid pThCT3_1: 15,872 bp CP091245

REBASE acronym: TspCT3

Org_num: 55956

 

All begin L2Y54_

Type I
ORF Gene Most similar Specificity Name
 
Chromosome
 
4385 response regulator transcription factor
4390 R TspQ5ORF9590P (95% identity) TspCT3ORF4400P
4395 DUF559 domain-containing protein
4400 M M.Tsp52ORFRP (97% identity) M.TspCT3ORF4400P
4405 DUF1778 domain-containing protein
4410 GNAT family N-acetyltransferase
4415 S S.Vvu249787ORF22505P (44% identity) S.TspCT3ORF4400P
4420 83 aa hypothetical protein
 
5710 tRNA 5-hydroxyuridine modification protein YegQ
5715 R Tsp52ORFYP (98% identity) TspCT3ORF5750P
5720 PIN domain-containing protein
5725 90 aa hypothetical protein
5730 DUF3368 domain-containing protein
5735 UPF0175 family protein
5740 IS5 family transposase
5745 S S.TspQ5ORF11140P (67% identity) S.TspCT3ORF5750P
5750 M M.TspQ5ORF11140P (59% identity) M.TspCT3ORF5750BP
5755 IS982 family transposase
5760 115 aa hypothetical protein
5765 M M.TspQ5ORF11140P (31% identity) M.TspCT3ORF5750AP
5770 thioredoxin family protein
 
5975 UPF0175 family protein
5980 S S.Dspc12ORF12905P (36% identity) S.TspCT3ORF5990P
5985 virulence RhuM family protein
5990 M M.Tfr49748II (96% identity) M.TspCT3ORF5990P
5995 R Tfr49748IIP (98% identity) TspCT3ORF5990P
6000 molybdopterin oxidoreductase family protein
 
12650 123 aa hypothetical protein
12655 R TunA1ORF8930P (91% identity) TspCT3ORF12670P
12660 83 aa hypothetical protein
12665 S S.TspK90ORF1634P (38% identity) S.TspCT3ORF12670P
12670 M M.TspA52ORF14860P (98% identity) M.TspCT3ORF12670P
12675 DUF1566 domain-containing protein
 
14450 PIN domain nuclease
14455 R MspG11ORFAP (84% identity) TspCT3ORF14475P
14460 AAA family ATPase
14465 S S.LweCUD13ORF2975P (50% identity) S2.TspCT3ORF14475P
14470 S S1.Tsp52IIP (99% identity) S1.TspCT3ORF14475P
14475 M M.Tsp52II (98% identity) M.TspCT3ORF14475P
14480 FtsH protease activity modulator HflK
 
20265 ATP-binding protein
20270 R AagBL06ORF5767P (80% identity) TspCT3ORF20305P
20275 244 aa hypothetical protein
20280 DUF3037 domain-containing protein
20285 DNA binding domain-containing protein
20290 metallophosphatase domain-containing protein
20295 DUF4268 domain-containing protein
20300 S S.Oso35ORF110735P (69% identity) S.TspCT3ORF20305P
20305 M M.Tsp52ORFXP (97% identity) M.TspCT3ORF20305P
20310 102 aa hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
2025 1-(5-phosphoribosyl)-5-[(5-
2030 R TspQ5ORF11400P (96% identity) TspCT3ORF2035P
2035 M M.TspQ5ORF11400P (98% identity) M.TspCT3ORF2035P
2040 imidazole glycerol phosphate synthase subunit
 
3385 O-antigen ligase family protein
3390 M M.TspQ5ORF10300P (96% identity) M.TspCT3ORF3390P
3395 histidine phosphatase family protein
 
3795 ABC transporter permease
3800 S S.SbaM52ORFFP (71% identity) S.TspCT3ORF3805P
3805 M M.SbaM52ORFFP (81% identity) M.TspCT3ORF3805P
3810 74 aa hypothetical protein
 
4140 YaeQ family protein
4145 R TspQ5ORF9800P (98% identity) TspCT3ORF4155P
4150 102 aa hypothetical protein
4155 M M.TspQ5ORF9800P (75% identity) M.TspCT3ORF4155P
4160 25 aa hypothetical protein
 
4160 25 aa hypothetical protein
4165 M M.Tsp52ORFMP (98% identity) M.TspCT3ORF4165P
4170 R Tca21228ORF1220P (97% identity) TspCT3ORF4165P
4175 polyamine aminopropyltransferase
 
4775 189 aa hypothetical protein
4780 M M.TspQ5ORF10405P (94% identity) M.TspCT3ORF4780P
4785 R TunA1ORF17415P (61% identity) TspCT3ORF4780P
4790 374 aa hypothetical protein
 
4785 210 aa hypothetical protein
4790 R Mge961ORF12465P (54% identity) TspCT3ORF4795P
4795 M M.TspQ5ORF10410P (94% identity) M.TspCT3ORF4795P
4800 ribonucleotide-diphosphate reductase subunit
 
4945 50S ribosomal protein L27
4950 M M.Tca21228ORF666P (97% identity) M.TspCT3ORF4950P
4955 R Tsp52ORFBP (92% identity) TspCT3ORF4950P
4960 GTPase ObgE
 
5390 transporter substrate-binding domain-containing
5395 M M.Tca21228ORF3650P (80% identity) M.TspCT3ORF5395P
5400 R Tca21228ORF3650P (77% identity) TspCT3ORF5395P
??? C C.YenpY1ORF18350P (50% identity) C.TspCT3ORF5395P
5405 ATP-binding protein
 
6120 385 aa hypothetical protein
6125 R TspQ5ORF7750P (97% identity) TspCT3ORF6130P
6130 M M.TunA1ORF15095P (97% identity) M.TspCT3ORF6130P
6135 DUF4143 domain-containing protein
 
8030 PH domain-containing protein
8035 M M.VpoRF30ORFEP (71% identity) M.TspCT3ORF8035P
8045 molybdopterin-synthase adenylyltransferase MoeB
 
plasmid pThCT3_1
 
21510 101 aa hypothetical protein
21515 R Ble402IIIP (73% identity) TspCT3ORF21520P
21520 M M.Ble402III (82% identity) M.TspCT3ORF21520P
21525 CopG family ribbon-helix-helix protein
Type III
ORF Gene Most similar Specificity Name
 
Chromosome
 
2485 type II toxin-antitoxin system MqsA family
2490 M M.Msp2102ORF5030P (71% identity) M.TspCT3ORF2490P
2495 R TspKTORF4100P (92% identity) TspCT3ORF2490P
2500 urea ABC transporter ATP-binding subunit UrtE
 
4675 DUF4391 domain-containing protein
4680 M M.TspA52ORF11905P (72% identity) M.TspCT3ORF4680P
4685 DNA binding domain-containing protein
4690 R TspKTORF8505P (97% identity) TspCT3ORF4680P
4695 aspartate carbamoyltransferase catalytic
 
17820 exodeoxyribonuclease V subunit beta
17825 R TspQ5ORF17430P (97% identity) TspCT3ORF17840P
17830 162 aa hypothetical protein
17835 ATP-binding protein
17840 M M.TspQ5ORF17430P (43% identity) M.TspCT3ORF17840P
17845 148 aa hypothetical protein