Thiothrix species CT3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Thiothrix species CT3 RM systems
Ref: Ravin,N.V. et al. unpublished
REBASE ref # 33918
| Sequence length: | GenBank #: | |
| Chromosome: | 4,343,903 bp | CP091244 |
| plasmid pThCT3_1: | 15,872 bp | CP091245 |
REBASE acronym: TspCT3
Org_num: 55956
All begin L2Y54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4385 | response regulator transcription factor | |||
| 4390 | R | TspQ5ORF9590P (95% identity) | TspCT3ORF4400P | |
| 4395 | DUF559 domain-containing protein | |||
| 4400 | M | M.TsuDNT52ORF5075P (97% identity) | M.TspCT3ORF4400P | |
| 4405 | DUF1778 domain-containing protein | |||
| 4410 | GNAT family N-acetyltransferase | |||
| 4415 | S | S.Mpa9ORF2150P (46% identity) | S.TspCT3ORF4400P | |
| 4420 | 83 aa hypothetical protein | |||
| 5710 | tRNA 5-hydroxyuridine modification protein YegQ | |||
| 5715 | R | TsuDNT52ORF3305P (98% identity) | TspCT3ORF5750P | |
| 5720 | PIN domain-containing protein | |||
| 5725 | 90 aa hypothetical protein | |||
| 5730 | DUF3368 domain-containing protein | |||
| 5735 | UPF0175 family protein | |||
| 5740 | IS5 family transposase | |||
| 5745 | S | S.TspQ5ORF11140P (67% identity) | S.TspCT3ORF5750P | |
| 5750 | M | M.TspQ5ORF11140P (59% identity) | M.TspCT3ORF5750BP | |
| 5755 | IS982 family transposase | |||
| 5760 | 115 aa hypothetical protein | |||
| 5765 | M | M.TsuDNT53ORFNP (88% identity) | M.TspCT3ORF5750AP | |
| 5770 | thioredoxin family protein | |||
| 5975 | UPF0175 family protein | |||
| 5980 | S | S.Dspc12ORF12905P (34% identity) | S.TspCT3ORF5990P | |
| 5985 | virulence RhuM family protein | |||
| 5990 | M | M.Tfr49748II (96% identity) | M.TspCT3ORF5990P | |
| 5995 | R | Tfr49748IIP (98% identity) | TspCT3ORF5990P | |
| 6000 | molybdopterin oxidoreductase family protein | |||
| 12650 | 123 aa hypothetical protein | |||
| 12655 | R | TsuDNT53ORFWP (96% identity) | TspCT3ORF12670P | |
| 12660 | 83 aa hypothetical protein | |||
| 12665 | S | S.TspK90ORF1634P (38% identity) | S.TspCT3ORF12670P | |
| 12670 | M | M.TspA52ORF14860P (98% identity) | M.TspCT3ORF12670P | |
| 12675 | DUF1566 domain-containing protein | |||
| 14450 | PIN domain nuclease | |||
| 14455 | R | TsuDNT52ORF16575P (98% identity) | TspCT3ORF14475P | |
| 14460 | AAA family ATPase | |||
| 14465 | S | S.LweCUD13ORF2975P (50% identity) | S2.TspCT3ORF14475P | |
| 14470 | S | S1.TsuDNT52ORF16575P (99% identity) | S1.TspCT3ORF14475P | |
| 14475 | M | M.TsuDNT53ORFJP (98% identity) | M.TspCT3ORF14475P | |
| 14480 | FtsH protease activity modulator HflK | |||
| 20265 | ATP-binding protein | |||
| 20270 | R | TsuDNT53ORFUBP (67% identity) | TspCT3ORF20305P | |
| 20275 | 244 aa hypothetical protein | |||
| 20280 | DUF3037 domain-containing protein | |||
| 20285 | DNA binding domain-containing protein | |||
| 20290 | metallophosphatase domain-containing protein | |||
| 20295 | DUF4268 domain-containing protein | |||
| 20300 | S | S.Oso35ORF110735P (68% identity) | S.TspCT3ORF20305P | |
| 20305 | M | M.TsuDNT53ORFUP (97% identity) | M.TspCT3ORF20305P | |
| 20310 | 102 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2025 | 1-(5-phosphoribosyl)-5-[(5- | |||
| 2030 | R | TspQ5ORF11400P (96% identity) | TspCT3ORF2035P | |
| 2035 | M | M.TspQ5ORF11400P (98% identity) | M.TspCT3ORF2035P | |
| 2040 | imidazole glycerol phosphate synthase subunit | |||
| 3385 | O-antigen ligase family protein | |||
| 3390 | M | M.TspQ5ORF10300P (96% identity) | M.TspCT3ORF3390P | |
| 3395 | histidine phosphatase family protein | |||
| 3795 | ABC transporter permease | |||
| 3800 | S | S.SbaM52ORFFP (71% identity) | S.TspCT3ORF3805P | |
| 3805 | M | M.SbaM52ORFFP (81% identity) | M.TspCT3ORF3805P | |
| 3810 | 74 aa hypothetical protein | |||
| 4140 | YaeQ family protein | |||
| 4145 | R | TspQ5ORF9800P (98% identity) | TspCT3ORF4155P | |
| 4150 | 102 aa hypothetical protein | |||
| 4155 | M | M.TspQ5ORF9800P (75% identity) | M.TspCT3ORF4155P | |
| 4160 | 25 aa hypothetical protein | |||
| 4160 | 25 aa hypothetical protein | |||
| 4165 | M | M.TsuDNT53ORFOP (98% identity) | M.TspCT3ORF4165P | |
| 4170 | R | Tca21228ORF1220P (97% identity) | TspCT3ORF4165P | |
| 4175 | polyamine aminopropyltransferase | |||
| 4775 | 189 aa hypothetical protein | |||
| 4780 | M | M.TspQ5ORF10405P (94% identity) | M.TspCT3ORF4780P | |
| 4785 | R | R2.TlaWSORF11255P (70% identity) | TspCT3ORF4780P | |
| 4790 | 374 aa hypothetical protein | |||
| 4785 | 210 aa hypothetical protein | |||
| 4790 | R | R3.TlaWSORF11255P (86% identity) | TspCT3ORF4795P | |
| 4795 | M | M.TspQ5ORF10410P (94% identity) | M.TspCT3ORF4795P | |
| 4800 | ribonucleotide-diphosphate reductase subunit | |||
| 4945 | 50S ribosomal protein L27 | |||
| 4950 | M | M.Tca21228ORF666P (97% identity) | M.TspCT3ORF4950P | |
| 4955 | R | TsuDNT53ORFPP (92% identity) | TspCT3ORF4950P | |
| 4960 | GTPase ObgE | |||
| 5390 | transporter substrate-binding domain-containing | |||
| 5395 | M | M.Tca21228ORF3650P (80% identity) | M.TspCT3ORF5395P | |
| 5400 | R | Tca21228ORF3650P (77% identity) | TspCT3ORF5395P | |
| ??? | C | C.YenpY1ORF18350P (50% identity) | C.TspCT3ORF5395P | |
| 5405 | ATP-binding protein | |||
| 6120 | 385 aa hypothetical protein | |||
| 6125 | R | TspQ5ORF7750P (97% identity) | TspCT3ORF6130P | |
| 6130 | M | M.TunA1ORF15095P (97% identity) | M.TspCT3ORF6130P | |
| 6135 | DUF4143 domain-containing protein | |||
| 8030 | PH domain-containing protein | |||
| 8035 | M | M.VpoRF30ORFEP (71% identity) | M.TspCT3ORF8035P | |
| 8045 | molybdopterin-synthase adenylyltransferase MoeB | |||
| plasmid pThCT3_1 | ||||
| 21510 | 101 aa hypothetical protein | |||
| 21515 | R | Ble402IIIP (73% identity) | TspCT3ORF21520P | |
| 21520 | M | M.Ble402III (82% identity) | M.TspCT3ORF21520P | |
| 21525 | CopG family ribbon-helix-helix protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2485 | type II toxin-antitoxin system MqsA family | |||
| 2490 | M | M.Nspsh817ORF9255P (71% identity) | M.TspCT3ORF2490P | |
| 2495 | R | TspKTORF4100P (92% identity) | TspCT3ORF2490P | |
| 2500 | urea ABC transporter ATP-binding subunit UrtE | |||
| 4675 | DUF4391 domain-containing protein | |||
| 4680 | M | M.TspA52ORF11905P (69% identity) | M.TspCT3ORF4680P | |
| 4685 | DNA binding domain-containing protein | |||
| 4690 | R | TspKTORF8505P (97% identity) | TspCT3ORF4680P | |
| 4695 | aspartate carbamoyltransferase catalytic | |||
| 17820 | exodeoxyribonuclease V subunit beta | |||
| 17825 | R | TspQ5ORF17430P (97% identity) | TspCT3ORF17840P | |
| 17830 | 162 aa hypothetical protein | |||
| 17835 | ATP-binding protein | |||
| 17840 | M | M.TspQ5ORF17430P (43% identity) | M.TspCT3ORF17840P | |
| 17845 | 148 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8910 | GlsB/YeaQ/YmgE family stress response membrane | |||
| 8915 | R | TspA52MrrP (99% identity) | TspCT3MrrP | |
| 8920 | helix-turn-helix domain-containing protein | |||
| 17190 | endonuclease domain-containing protein | |||
| 17195 | R | TlaWSGmrSDP (59% identity) | TspCT3GmrSDP | |
| 17200 | spermidine/putrescine ABC transporter permease | |||