Rhodanobacter denitrificans DSM-24678 |
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Putative Rhodanobacter denitrificans DSM-24678 RM systems
Ref: Zhou,A. and Zhou,J. unpublished
REBASE ref # 33737
Complete sequence: 3,958,367 bp
GenBank #: CP088919
REBASE acronym: Rde24678
Org_num: 55088
All begin LRK24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3065 | M61 family metallopeptidase | |||
| 3075 | M | M.Rsp24678ORF13313P (100% identity) | M.Rde24678ORF3075P | |
| 3080 | S | S.RdeR2ORF3623P (100% identity) | S.Rde24678ORF3075P | |
| 3085 | type II toxin-antitoxin system RelE/ParE family | |||
| 3090 | HigA family addiction module antitoxin | |||
| 3095 | R | Rsp24678ORF13313P (100% identity) | Rde24678ORF3075P | |
| 3100 | glycerophosphodiester phosphodiesterase | |||
| 17700 | helix-turn-helix transcriptional regulator | |||
| 17705 | M | M.Rsp24678ORF17005P (100% identity) | M.Rde24678ORF17705P | |
| 17710 | S | S.RdeR3ORF17580P (100% identity) | S.Rde24678ORF17705P | |
| 17715 | toll/interleukin-1 receptor domain-containing | |||
| 17750 | XRE family transcriptional regulator | |||
| 17755 | R | Rsp24678ORF17055P (100% identity) | Rde24678ORF17755P | |
| 17760 | 165 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9230 | AAA family ATPase | |||
| 9235 | M | M.RdeR5ORF10390P (100% identity) | M.Rde24678ORF9235P | |
| 9240 | 181 aa hypothetical protein | |||
| 9995 | EamA family transporter | |||
| 10000 | R | Rsp24678ORF17320P (100% identity) | CTCGAG | Rde24678ORF10005P |
| 10005 | M | M.RdeR2ORF2481P (99% identity) | M.Rde24678ORF10005P | |
| 10010 | glycosyltransferase | |||
| 11050 | ribbon-helix-helix protein, CopG family | |||
| 11055 | M | M.Rsp24678ORF3635P (100% identity) | ACCGGT | M.Rde24678ORF11055P |
| 11060 | 555 aa hypothetical protein | |||
| 11065 | restriction endonuclease-like protein | |||
| 11070 | V | V.Rsp24678ORF3635P (100% identity) | V.Rde24678ORF11055P | |
| 11075 | phage infection protein | |||
| 14755 | DUF2069 domain-containing protein | |||
| 14760 | R | Rsp24678ORFAP (87% identity) | R1.Rde24678ORF14770P | |
| 14765 | IS701 family transposase | |||
| ??? | R | Rsp24678ORF16835P (100% identity) | GGGCCC | R2.Rde24678ORF14770P |
| 14770 | M | M.Rsp24678ORF16835P (100% identity) | GGGCCC | M.Rde24678ORF14770P |
| 14775 | thioesterase family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8690 | Fic family protein | |||
| 8695 | M | M.Rsp24678ORF5071P (100% identity) | M.Rde24678ORF8695P | |
| 8700 | R | Rsp24678ORF5071P (100% identity) | Rde24678ORF8695P | |
| 8705 | Tn3 family transposase | |||
| 13840 | ComF family protein | |||
| 13845 | M | M.Rsp24678ORF7981P (72% identity) | M.Rde24678ORF13845P | |
| 13850 | R | Rsp24678ORF7981P (100% identity) | Rde24678ORF13845P | |
| 13855 | NERD domain-containing protein | |||
| 16285 | 148 aa hypothetical protein | |||
| 16290 | M | M.Rsp24678ORF8833P (99% identity) | M.Rde24678ORF16290P | |
| 16295 | HigA family addiction module antitoxin | |||
| 16300 | type II toxin-antitoxin system RelE/ParE family | |||
| 16305 | R | Rsp24678ORF8833P (100% identity) | Rde24678ORF16290P | |
| 16310 | APC family permease | |||