Escherichia coli E-T344-1 |
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Putative Escherichia coli E-T344-1 RM systems
Ref: Chen,J. et al. unpublished
REBASE ref # 33374
| Sequence length: | GenBank #: | |
| Chromosome: | 4,715,879 bp | CP090285 |
| plasmid punnamed1: | 64,208 bp | CP090288 |
REBASE acronym: EcoET3441
Org_num: 53702
All begin LZT44_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5590 | IS1 family transposase | |||
| 5595 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoET3441ORF5605P |
| 5600 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoET3441ORF5605P |
| 5605 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoET3441ORF5605P |
| 5610 | integrase core domain-containing protein | |||
| 13535 | transcription factor | |||
| 13540 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoET3441ORF13540P |
| 13545 | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S.EcoET3441ORF13540P |
| 13550 | DUF4433 domain-containing protein | |||
| 13555 | macro domain-containing protein | |||
| 13560 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoET3441ORF13540P |
| 13565 | M48 family metallopeptidase | |||
| plasmid punnamed1 | ||||
| 23575 | IS1 family transposase | |||
| 23580 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | EcoET3441ORF23590P |
| 23585 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.EcoET3441ORF23590P |
| 23590 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.EcoET3441ORF23590P |
| 23595 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2425 | DUF2556 family protein | |||
| 2430 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoET3441ORF2430P |
| 2435 | DNA-binding transcriptional regulator Fis | |||
| 8840 | phosphohydrolase | |||
| 8845 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.EcoET3441DcmP |
| 8850 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoET3441DcmP |
| 8855 | drug/metabolite exporter YedA | |||
| 21615 | 341 aa hypothetical protein | |||
| 21620 | M | M.EcosE2ORF21575P (100% identity) | GGCC | M.EcoET3441ORF21620P |
| 21625 | 68 aa hypothetical protein | |||
| plasmid punnamed1 | ||||
| 23480 | 73 aa hypothetical protein | |||
| 23485 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoET3441ORF23485P |
| 23490 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12850 | isocitrate/isopropylmalate family dehydrogenase | |||
| 12855 | R | EmaE2C08McrCP (100% identity) | EcoET3441McrCP | |
| 12860 | R | EcoteDMcrBP (100% identity) | EcoET3441McrBP | |
| 12865 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14745 | replication endonuclease | |||
| 14750 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoET3441ORF14750P |
| 14755 | TraR/DksA family transcriptional regulator | |||