Rhodococcus qingshengii VT6 |
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Putative Rhodococcus qingshengii VT6 RM systems
Ref: Delegan,Y. et al. unpublished
REBASE ref # 33746
| Sequence length: | GenBank #: | |
| Chromosome: | 6,457,868 bp | CP088906 |
| plasmid pCP1: | 100,387 bp | CP088907 |
| plasmid pCP2: | 132,858 bp | CP088908 |
REBASE acronym: RqiVT6
Org_num: 55105
All begin LRL17_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pCP2 | ||||
| 30470 | 412 aa hypothetical protein | |||
| 30475 | R | Msp12510ORF408P (82% identity) | RqiVT6ORF30480P | |
| 30480 | M | M.Msp12510ORF408P (51% identity) | M.RqiVT6ORF30480P | |
| 30485 | S | S.Psp2021ORF18720P (36% identity) | S.RqiVT6ORF30480P | |
| 30490 | recombinase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6045 | 116 aa hypothetical protein | |||
| 6050 | M | M.Rsp008ORF22065P (93% identity) | M.RqiVT6ORF6050P | |
| 6055 | replication-relaxation family protein | |||
| 6340 | 227 aa hypothetical protein | |||
| 6345 | R | Rsp008IIP (88% identity) | GCCGGC | RqiVT6ORF6350P |
| 6350 | M | M.Rsp008II (100% identity) | GCCGGC | M.RqiVT6ORF6350P |
| 6355 | ATP-binding protein | |||
| 14010 | TetR/AcrR family transcriptional regulator | |||
| 14015 | M | M.Rsp3ORFDP (99% identity) | M.RqiVT6ORF14015P | |
| 14025 | multidrug effflux MFS transporter | |||
| 25970 | DUF998 domain-containing protein | |||
| 25975 | V | V.RspP2ORF14690P (100% identity) | CTCGAG | V.RqiVT6ORF25985P |
| 25980 | 286 aa hypothetical protein | |||
| 25985 | M | M.RspRHZ01ORFAP (100% identity) | CTCGAG | M.RqiVT6ORF25985P |
| 25990 | glycolipid-binding domain-containing | |||
| plasmid pCP1 | ||||
| 30200 | DUF3024 domain-containing protein | |||
| 30205 | RM | Rqi15477ORF215P (95% identity) | RqiVT6ORF30205P | |
| 30210 | DEAD/DEAH box helicase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pCP2 | ||||
| 30460 | DEAD/DEAH box helicase | |||
| 30465 | R | RerKB1GmrSDP (100% identity) | RqiVT6GmrSDP | |
| 30470 | 412 aa hypothetical protein | |||