Escherichia coli A16EC0554 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli A16EC0554 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,171,229 bp | CP088851 |
| plasmid pA16EC0554-1: | 107,076 bp | CP088852 |
| plasmid pA16EC0554-2: | 107,842 bp | CP088853 |
REBASE acronym: EcoC0554
Org_num: 53586
All begin LQT70_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19550 | type IV toxin-antitoxin system AbiEi family | |||
| 19555 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0554ORF19560P |
| 19560 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0554ORF19560P |
| 19565 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0554ORF19560P |
| 19570 | ash family protein | |||
| 21635 | restriction endonuclease | |||
| 21640 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0554ORF21640P |
| 21645 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0554ORF21640P |
| 21650 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0554ORF21640P |
| 21655 | endoribonuclease SymE | |||
| plasmid pA16EC0554-2 | ||||
| 26260 | type II toxin-antitoxin system Phd/YefM family | |||
| 26265 | M | M.EcoEC0899ORF26310P (100% identity) | M.EcoC0554ORF26265P | |
| 26270 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2165 | cell division protein DamX | |||
| 2170 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0554DamP |
| 2175 | ribulose-phosphate 3-epimerase | |||
| 2765 | DUF2556 family protein | |||
| 2770 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0554ORF2770P |
| 2775 | DNA-binding transcriptional regulator Fis | |||
| 7120 | DUF1382 family protein | |||
| 7125 | M | M.Esp911AORF3194P (100% identity) | GATC | M.EcoC0554ORF7125P |
| 7130 | PerC family transcriptional regulator | |||
| 10240 | phosphohydrolase | |||
| 10245 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0554DcmP |
| 10250 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0554DcmP |
| 10255 | drug/metabolite exporter YedA | |||
| 13780 | DUF3927 family protein | |||
| 13795 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0554ORF13795P |
| 13800 | TrmB family transcriptional regulator | |||
| 16060 | helix-turn-helix domain-containing protein | |||
| 16065 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0554ORF16065P | |
| 16070 | 71 aa hypothetical protein | |||
| 19730 | phage lysis protein EssD | |||
| 19735 | M | M.Sso63633ORF22290P (100% identity) | M.EcoC0554ORF19735P | |
| 19740 | 95 aa hypothetical protein | |||
| 19775 | LexA family transcriptional regulator | |||
| 19780 | M | M.EcoEC0899ORF22010P (100% identity) | GATC | M.EcoC0554ORF19780P |
| 19785 | PerC family transcriptional regulator | |||
| plasmid pA16EC0554-2 | ||||
| 26325 | 103 aa hypothetical protein | |||
| 26330 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoC0554ORF26330P |
| 26335 | 73 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pA16EC0554-1 | ||||
| 25595 | 269 aa hypothetical protein | |||
| 25600 | M | M.Sso524ORF460P (100% identity) | GATC | M.EcoC0554ORF25600P |
| 25605 | 76 aa hypothetical protein | |||