Escherichia coli B16EC0268 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli B16EC0268 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 4,851,226 bp | CP088808 |
| plasmid pB16EC0268-3: | 81,175 bp | CP088810 |
| plasmid pB16EC0268-4: | 94,402 bp | CP088811 |
REBASE acronym: EcoC0268
Org_num: 53604
All begin LQT63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5770 | ash family protein | |||
| 5775 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0268ORF5780P |
| 5780 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0268ORF5780P |
| 5785 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0268ORF5780P |
| 5790 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3545 | 97 aa hypothetical protein | |||
| 3550 | R | Ecos19ORF20635P (100% identity) | EcoC0268ORF3550P | |
| 3555 | response regulator receiver domain | |||
| 3560 | ATP-binding protein | |||
| 3565 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoC0268ORF3565P |
| 3570 | 174 aa hypothetical protein | |||
| 3835 | helix-turn-helix domain-containing protein | |||
| 3840 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoC0268ORF3840P |
| 3845 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0268ORF3840P |
| 3850 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0268ORF3840P |
| 3855 | McrC family protein | |||
| 14285 | drug/metabolite exporter YedA | |||
| 14290 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0268DcmP |
| 14295 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoC0268DcmP |
| 14300 | phosphohydrolase | |||
| 21375 | DNA-binding transcriptional regulator Fis | |||
| 21380 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0268ORF21380P |
| 21385 | DUF2556 family protein | |||
| 21975 | ribulose-phosphate 3-epimerase | |||
| 21980 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0268DamP |
| 21985 | cell division protein DamX | |||
| plasmid pB16EC0268-3 | ||||
| 23940 | phage holin family protein | |||
| 23945 | M | M.EcoC0268ORF24190P (93% identity) | M.EcoC0268ORF23945P | |
| 23950 | 75 aa hypothetical protein | |||
| 24185 | 75 aa hypothetical protein | |||
| 24190 | M | M.Ecop367ORF26210P (99% identity) | M.EcoC0268ORF24190P | |
| 24195 | phage holin family protein | |||
| plasmid pB16EC0268-4 | ||||
| 24965 | 85 aa hypothetical protein | |||
| 24970 | M | M.EfeC13ORF24760P (99% identity) | M.EcoC0268ORF24970P | |
| 24975 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3850 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 3855 | R | EcosS9McrCP (100% identity) | EcoC0268McrCP | |
| 3860 | R | EcosS3McrBP (100% identity) | EcoC0268McrBP | |
| 3865 | glycosyltransferase | |||