Escherichia coli B16EC0708 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli B16EC0708 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,203,849 bp | CP088779 |
| plasmid pB16EC0708-1: | 107,853 bp | CP088780 |
REBASE acronym: EcoC0708
Org_num: 53612
All begin LQT28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20815 | type IV toxin-antitoxin system AbiEi family | |||
| 20820 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0708ORF20825P |
| 20825 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0708ORF20825P |
| 20830 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0708ORF20825P |
| 20835 | ash family protein | |||
| 22900 | restriction endonuclease | |||
| 22905 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0708ORF22905P |
| 22910 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0708ORF22905P |
| 22915 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0708ORF22905P |
| 22920 | endoribonuclease SymE | |||
| plasmid pB16EC0708-1 | ||||
| 25670 | IS1-like element IS1A family transposase | |||
| 25675 | M | M.EcoEC0899ORF26310P (100% identity) | M.EcoC0708ORF25675P | |
| 25680 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1895 | BREX-1 system phosphatase PglZ type A | |||
| 1900 | RM | EcosR9ORF15335P (100% identity) | CANCATC | EcoC0708ORF1900P |
| 1905 | BREX system P-loop protein BrxC | |||
| 4020 | DUF2556 family protein | |||
| 4025 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0708ORF4025P |
| 4030 | DNA-binding transcriptional regulator Fis | |||
| 8390 | DUF1382 family protein | |||
| 8395 | M | M.Esp911AORF3194P (100% identity) | GATC | M.EcoC0708ORF8395P |
| 8400 | PerC family transcriptional regulator | |||
| 11500 | phosphohydrolase | |||
| 11505 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0708DcmP |
| 11510 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0708DcmP |
| 11515 | drug/metabolite exporter YedA | |||
| 15040 | DUF3927 family protein | |||
| 15055 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0708ORF15055P |
| 15060 | TrmB family transcriptional regulator | |||
| 17320 | helix-turn-helix domain-containing protein | |||
| 17325 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0708ORF17325P | |
| 17330 | 71 aa hypothetical protein | |||
| 20995 | phage lysis protein EssD | |||
| 21000 | M | M.Sso63633ORF22290P (100% identity) | M.EcoC0708ORF21000P | |
| 21005 | 95 aa hypothetical protein | |||
| 21040 | LexA family transcriptional regulator | |||
| 21045 | M | M.EcoEC0899ORF22010P (100% identity) | GATC | M.EcoC0708ORF21045P |
| 21050 | PerC family transcriptional regulator | |||
| 24195 | response regulator receiver domain | |||
| 24200 | R | EcosS3ORF15775P (100% identity) | EcoC0708ORF24205P | |
| 24205 | M | M.EcosS3ORF15775P (100% identity) | M.EcoC0708ORF24205P | |
| 24210 | conjugal transfer protein TraG N-terminal | |||
| plasmid pB16EC0708-1 | ||||
| 25605 | 73 aa hypothetical protein | |||
| 25610 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoC0708ORF25610P |
| 25615 | 103 aa hypothetical protein | |||