Escherichia coli C16EC0626 |
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Putative Escherichia coli C16EC0626 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,160,404 bp | CP088656 |
| plasmid pC16EC0626-1: | 87,368 bp | CP088655 |
REBASE acronym: EcoC0626
Org_num: 53651
All begin LQT16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20075 | adenine/cytosine-specific restriction | |||
| 20080 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | EcoC0626ORF20085P |
| 20085 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.EcoC0626ORF20085P |
| 20090 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoC0626ORF20085P |
| 20095 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2015 | phosphohydrolase | |||
| 2020 | M | M.Ecou021DcmP (100% identity) | CCWGG | M.EcoC0626DcmP |
| 2025 | V | V.Ecostr9DcmP (74% identity) | CCWGG | V.EcoC0626DcmP |
| 2030 | drug/metabolite exporter YedA | |||
| 5700 | 39 aa hypothetical protein | |||
| 5720 | M | M.SsoCS14ORF10750P (100% identity) | A | M.EcoC0626ORF5720P |
| 5725 | TrmB family transcriptional regulator | |||
| 6635 | NinE family protein | |||
| 6640 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoC0626ORF6640P |
| 6645 | recombination protein NinB | |||
| 14205 | DNA-binding transcriptional regulator Fis | |||
| 14210 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.EcoC0626ORF14210P |
| 14215 | DUF2556 family protein | |||
| 14735 | ribulose-phosphate 3-epimerase | |||
| 14740 | M | M.Ecos69DamP (100% identity) | GATC | M.EcoC0626DamP |
| 14745 | cell division protein DamX | |||
| plasmid pC16EC0626-1 | ||||
| 15 | 73 aa hypothetical protein | |||
| 20 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoC0626ORF20P |
| 25 | 103 aa hypothetical protein | |||
| 325 | IS1 family transposase | |||
| 330 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoC0626ORF330P |
| 335 | R | YpsR1ORFAP (100% identity) | CCWGG | EcoC0626ORF330P |
| 340 | IS6-like element IS6100 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20070 | GTPase | |||
| 20075 | R | Ssp28760MrrP (100% identity) | EcoC0626MrrP | |
| 20080 | type I restriction-modification system | |||
| 20095 | endoribonuclease SymE | |||
| 20100 | R | SenHNK130McrBP (100% identity) | EcoC0626McrBP | |
| 20105 | R | SenHNK130McrCP (100% identity) | EcoC0626McrCP | |