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Putative Escherichia coli C16EC0672 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
Sequence length: | GenBank #: | |
Chromosome: | 5,037,008 bp | CP088652 |
plasmid pC16EC0672-2: | 70,220 bp | CP088653 |
REBASE acronym: EcoC0672
Org_num: 53653
All begin LQT73_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
5735 | ash family protein | |||
5740 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0672ORF5745P |
5745 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0672ORF5745P |
5750 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0672ORF5745P |
5755 | type IV toxin-antitoxin system AbiEi family | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
3505 | 97 aa hypothetical protein | |||
3510 | R | Ecos19ORF20635P (100% identity) | EcoC0672ORF3510P | |
3515 | response regulator receiver domain | |||
3520 | ATP-binding protein | |||
3525 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoC0672ORF3525P |
3530 | 174 aa hypothetical protein | |||
3795 | helix-turn-helix domain-containing protein | |||
??? | M | M1.EcosS9ORF2810P (100% identity) | M1.EcoC0672ORF3800P | |
3810 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC0672ORF3800P |
3815 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC0672ORF3800P |
3820 | McrC family protein | |||
14480 | 39 aa hypothetical protein | |||
14500 | M | M.EcoK1516ORFHP (100% identity) | A | M.EcoC0672ORF14500P |
14505 | TrmB family transcriptional regulator | |||
14505 | TrmB family transcriptional regulator | |||
14510 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoC0672ORF14520P |
14515 | R | R2.EcosS3ORF2905P (99% identity) | GTCGAC | R2.EcoC0672ORF14520P |
14520 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoC0672ORF14520P |
14525 | antitermination protein | |||
15100 | drug/metabolite exporter YedA | |||
15105 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0672DcmP |
15110 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0672DcmP |
15115 | phosphohydrolase | |||
22580 | DNA-binding transcriptional regulator Fis | |||
22585 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0672ORF22585P |
22590 | DUF2556 family protein | |||
23175 | ribulose-phosphate 3-epimerase | |||
23180 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0672DamP |
23185 | cell division protein DamX | |||
plasmid pC16EC0672-2 | ||||
25460 | 73 aa hypothetical protein | |||
25465 | M | M.Ssop356ORFAP (100% identity) | M.EcoC0672ORF25465P | |
25470 | 97 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
3815 | Alw26I/Eco31I/Esp3I family type II restriction | |||
3820 | R | EcosS9McrCP (100% identity) | EcoC0672McrCP | |
3825 | R | EcosS3McrBP (100% identity) | EcoC0672McrBP | |
3830 | glycosyltransferase |