Escherichia coli E16EC0405 |
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Putative Escherichia coli E16EC0405 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,206,523 bp | CP088551 |
| plasmid pE16EC0405-1: | 111,917 bp | CP088552 |
REBASE acronym: EcoC0405
Org_num: 53720
All begin LQT14_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2395 | endoribonuclease SymE | |||
| 2400 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoC0405ORF2410P |
| 2405 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoC0405ORF2410P |
| 2410 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoC0405ORF2410P |
| 2415 | restriction endonuclease | |||
| 4480 | ash family protein | |||
| 4485 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC0405ORF4490P |
| 4490 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC0405ORF4490P |
| 4495 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC0405ORF4490P |
| 4500 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid pE16EC0405-1 | ||||
| 25640 | type II toxin-antitoxin system Phd/YefM family | |||
| 25645 | M | M.EcoEC0899ORF26310P (100% identity) | M.EcoC0405ORF25645P | |
| 25650 | IS1-like element IS1A family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1090 | conjugal transfer protein TraG N-terminal | |||
| 1095 | M | M.EcosS3ORF15775P (100% identity) | M.EcoC0405ORF1095P | |
| 1100 | R | EcosS3ORF15775P (100% identity) | EcoC0405ORF1095P | |
| 1105 | response regulator receiver domain | |||
| 4265 | PerC family transcriptional regulator | |||
| 4270 | M | M.EcoEC0899ORF22010P (100% identity) | GATC | M.EcoC0405ORF4270P |
| 4275 | LexA family transcriptional regulator | |||
| 4310 | 95 aa hypothetical protein | |||
| 4315 | M | M.Sso63633ORF22290P (100% identity) | M.EcoC0405ORF4315P | |
| 4320 | phage lysis protein EssD | |||
| 7990 | 71 aa hypothetical protein | |||
| 7995 | M | M.KpnYN1ORFGP (89% identity) | M.EcoC0405ORF7995P | |
| 8000 | helix-turn-helix domain-containing protein | |||
| 10270 | TrmB family transcriptional regulator | |||
| 10275 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoC0405ORF10275P |
| 10290 | DUF3927 family protein | |||
| 13820 | drug/metabolite exporter YedA | |||
| 13825 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoC0405DcmP |
| 13830 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoC0405DcmP |
| 13835 | phosphohydrolase | |||
| 16940 | PerC family transcriptional regulator | |||
| 16945 | M | M.Esp911AORF3194P (100% identity) | GATC | M.EcoC0405ORF16945P |
| 16950 | DUF1382 family protein | |||
| 21300 | DNA-binding transcriptional regulator Fis | |||
| 21305 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC0405ORF21305P |
| 21310 | DUF2556 family protein | |||
| 21900 | ribulose-phosphate 3-epimerase | |||
| 21905 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC0405DamP |
| 21910 | cell division protein DamX | |||
| 23425 | BREX system P-loop protein BrxC | |||
| 23430 | RM | EcosR9ORF15335P (100% identity) | CANCATC | EcoC0405ORF23430P |
| 23435 | BREX-1 system phosphatase PglZ type A | |||