Escherichia coli F17EC0098 |
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Putative Escherichia coli F17EC0098 RM systems
Ref: Yoon,E.-J. et al. unpublished
REBASE ref # 33366
| Sequence length: | GenBank #: | |
| Chromosome: | 5,362,990 bp | CP088356 |
| plasmid pF17EC0098-1: | 150,952 bp | CP088357 |
REBASE acronym: EcoEC0098
Org_num: 53797
All begin LQQ82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4845 | endoribonuclease SymE | |||
| 4850 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoEC0098ORF4860P |
| 4855 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoEC0098ORF4860P |
| 4860 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoEC0098ORF4860P |
| 4865 | restriction endonuclease | |||
| 6670 | ash family protein | |||
| 6675 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoEC0098ORF6680P |
| 6680 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoEC0098ORF6680P |
| 6685 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoEC0098ORF6680P |
| 6690 | type IV toxin-antitoxin system AbiEi family | |||
| 11050 | 75 aa hypothetical protein | |||
| 11055 | R | EcosEC2ORF13930P (100% identity) | EcoEC0098ORF11065P | |
| 11060 | S | S.EcosS1ORF17110P (100% identity) | S.EcoEC0098ORF11065P | |
| 11065 | M | M.EcosS1ORF17110P (100% identity) | M.EcoEC0098ORF11065P | |
| 11070 | GTPase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1905 | cell division protein DamX | |||
| 1910 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEC0098DamP |
| 1915 | ribulose-phosphate 3-epimerase | |||
| 4490 | helix-turn-helix domain-containing protein | |||
| 4495 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoEC0098ORF4495P |
| 4500 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoEC0098ORF4495P |
| 4505 | R | R1.EcoS4ORF17760P (100% identity) | GGTCTC | EcoEC0098ORF4495BP |
| 4510 | IS3-like element ISEc52 family transposase | |||
| 4515 | R | EcosS9ORF2810P (33% identity) | GGTCTC | EcoEC0098ORF4495AP |
| 4520 | McrC family protein | |||
| 10175 | 71 aa hypothetical protein | |||
| 10180 | M | M.KpnYN1ORFGP (89% identity) | M.EcoEC0098ORF10180P | |
| 10185 | helix-turn-helix domain-containing protein | |||
| 12810 | TrmB family transcriptional regulator | |||
| 12815 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoEC0098ORF12815P |
| 12830 | DUF3927 family protein | |||
| 15805 | TrmB family transcriptional regulator | |||
| 15810 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.EcoEC0098ORF15820P |
| 15815 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.EcoEC0098ORF15820P |
| 15820 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoEC0098ORF15820P |
| 15825 | antitermination protein | |||
| 16690 | drug/metabolite exporter YedA | |||
| 16695 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoEC0098DcmP |
| 16700 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoEC0098DcmP |
| 16705 | phosphohydrolase | |||
| 23890 | response regulator receiver domain | |||
| 23895 | R | EcosS3ORF15775P (100% identity) | EcoEC0098ORF23900P | |
| 23900 | M | M.EcosS3ORF15775P (100% identity) | M.EcoEC0098ORF23900P | |
| 23905 | conjugal transfer protein TraG N-terminal | |||
| plasmid pF17EC0098-1 | ||||
| 27215 | 73 aa hypothetical protein | |||
| 27220 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoEC0098ORF27220P | |
| 27225 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4515 | 195 aa hypothetical protein | |||
| 4520 | R | EcosS9McrCP (100% identity) | EcoEC0098McrCP | |
| 4525 | R | EcosS3McrBP (100% identity) | EcoEC0098McrBP | |
| 4530 | glycosyltransferase | |||