Rhodoferax ferrireducens T118 |
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Putative Rhodoferax ferrireducens T118 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 9690
| Sequence length: | GenBank #: | |
| Chromosome: | 4,712,337 bp | CP000267 (NC_007908) |
| plasmid1: | 257,447 bp | CP000268 (NC_007901) |
REBASE acronym: RfeD
Org_num: 4288
All begin Rfer_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 27 | protein of unknown function DUF296 | |||
| 28 | R | HspLS2ORF11250P (78% identity) | RfeDORF32P | |
| 29 | 377 aa hypothetical protein | |||
| 30 | S | S.EsaNPORF30P (51% identity) | S.RfeDORF32P | |
| 31 | protein of unknown function DUF1016 | |||
| 32 | M | M.HspLS2ORF11250P (78% identity) | M.RfeDORF32P | |
| 33 | 91 aa hypothetical protein | |||
| 1058 | 478 aa hypothetical protein | |||
| 1059 | M | M.PspCG912ORFIP (90% identity) | M.RfeDORF1059P | |
| 1060 | S | S.Ava2BORF13975P (51% identity) | S.RfeDORF1059P | |
| 1061 | protein of unknown function DUF262 | |||
| 1062 | R | PspCG912ORFIP (82% identity) | RfeDORF1059P | |
| 1063 | thymidylate synthase | |||
| 1364 | 65 aa hypothetical protein | |||
| 1365 | M | M.BspPML1ORF5770P (59% identity) | M.RfeDORF1365P | |
| 1366 | S | type I site-specific | S.RfeDORF1365P | |
| 1367 | R | BspPML1ORF5770P (60% identity) | RfeDORF1365P | |
| 1368 | 206 aa hypothetical protein | |||
| 4005 | 610 aa conserved hypothetical protein | |||
| 4006 | M | M.SspAH1ORF1240P (88% identity) | M.RfeDORF4006P | |
| 4007 | S | S.PveR4ORFHP (77% identity) | S.RfeDORF4006P | |
| 4008 | 232 aa hypothetical protein | |||
| 4009 | 340 aa conserved hypothetical protein | |||
| 4010 | R | SspAH1ORF1240P (84% identity) | RfeDORF4006P | |
| 4011 | transcriptional regulator, LysR family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1821 | transcriptional regulator, XRE family | |||
| 1822 | M | M.EsaNPORF29P (66% identity) | M.RfeDORF1822P | |
| 1823 | glutaminyl-tRNA synthetase | |||
| 3074 | 594 aa hypothetical protein | |||
| 3075 | V | V.VspPBSH4ORF4176P (75% identity) | V.RfeDORF3077P | |
| 3076 | 227 aa hypothetical protein | |||
| 3077 | M | M.Jag9628ORF4256P (72% identity) | M.RfeDORF3077P | |
| 3078 | 359 aa hypothetical protein | |||
| plasmid1 | ||||
| 4326 | 95 aa hypothetical protein | |||
| 4327 | RM | HspPBLH3ORF22095P (74% identity) | RfeDORF4327P | |
| 4328 | phage integrase | |||
| 4480 | 77 aa hypothetical protein | |||
| 4481 | M | DNA methylase N-4/N-6 | M.RfeDORF4481P | |
| 4482 | 148 aa conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1818 | protein of unknown function DUF1332 | |||
| 1819 | R | Vsp38RMrrP (52% identity) | RfeDMrrP | |
| 1820 | pseudogene | |||