Acidithiobacillus ferrooxidans YQ-N3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Acidithiobacillus ferrooxidans YQ-N3 RM systems
Ref: Li,W. and Feng,Q. unpublished
REBASE ref # 33093
| Sequence length: | GenBank #: | |
| Chromosome: | 3,043,496 bp | CP084172 |
| plasmid unnamed2: | 34,460 bp | CP084174 |
REBASE acronym: AfeYQN3
Org_num: 52785
All begin LDB30_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3720 | type I restriction endonuclease subunit R | |||
| 3725 | R | AfeBYMORF4280P (100% identity) | AfeYQN3ORF3730P | |
| 3730 | M | M.AfeBYMORF4280P (100% identity) | M.AfeYQN3ORF3730P | |
| 3735 | virulence RhuM family protein | |||
| 3740 | S | S.Asp221ORFSP (62% identity) | S.AfeYQN3ORF3730P | |
| 3745 | SIR2 family protein | |||
| 4385 | 85 aa hypothetical protein | |||
| 4390 | M | M.AfeBYMORF4935P (100% identity) | M.AfeYQN3ORF4390P | |
| 4395 | DUF4062 domain-containing protein | |||
| 4400 | virulence RhuM family protein | |||
| 4405 | S | S.AfeBORF964P (96% identity) | S.AfeYQN3ORF4390P | |
| 4410 | 937 aa hypothetical protein | |||
| 4415 | R | AfeBYMORF4935P (100% identity) | AfeYQN3ORF4390P | |
| 4420 | M48 family metallopeptidase | |||
| 10570 | metalloregulator ArsR/SmtB family transcription | |||
| 10580 | M | M.AfeBYMORF11875P (100% identity) | M.AfeYQN3ORF10580P | |
| 10585 | 67 aa hypothetical protein | |||
| 10590 | AAA family ATPase | |||
| 10595 | DEAD/DEAH box helicase | |||
| 10600 | 262 aa hypothetical protein | |||
| 10605 | S | S.AfeBYMORF11875P (100% identity) | S.AfeYQN3ORF10580P | |
| 10610 | 118 aa hypothetical protein | |||
| 10615 | ATP-binding protein | |||
| 10620 | R | AfeBYMORF11875P (100% identity) | AfeYQN3ORF10580P | |
| 10625 | 4-hydroxy-3-polyprenylbenzoate decarboxylase | |||
| 12895 | 114 aa hypothetical protein | |||
| 12900 | R | AfeYL25ORF1485P (93% identity) | AfeYQN3ORF12955P | |
| 12905 | 272 aa hypothetical protein | |||
| 12910 | S | S.PflC2ORF10885P (39% identity) | S.AfeYQN3ORF12955P | |
| 12915 | DUF4926 domain-containing protein | |||
| 12920 | 87 aa hypothetical protein | |||
| 12925 | DUF4926 domain-containing protein | |||
| 12930 | type II toxin-antitoxin system PemK/MazF family | |||
| 12935 | 69 aa hypothetical protein | |||
| 12940 | 71 aa hypothetical protein | |||
| 12945 | BrnA antitoxin family protein | |||
| 12950 | BrnT family toxin | |||
| 12955 | M | M.AfeBYMORF13885P (70% identity) | M.AfeYQN3ORF12955BP | |
| 12960 | M | M.AfeBYMORF13885P (21% identity) | M.AfeYQN3ORF12955AP | |
| 12965 | 101 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 705 | BREX-3 system phosphatase PglZ | |||
| 710 | R | Msp165ORF9330P (96% identity) | AfeYQN3ORF715P | |
| 715 | M | M.MunFAM5ORF1562P (55% identity) | M.AfeYQN3ORF715P | |
| 720 | DUF6079 family protein | |||
| 855 | 361 aa hypothetical protein | |||
| 860 | M | M.AthC19377ORF603P (96% identity) | M.AfeYQN3ORF860P | |
| 865 | single-stranded DNA-binding protein | |||
| 5970 | site-specific integrase | |||
| 5975 | M | M.Ath19377ORFGP (74% identity) | M.AfeYQN3ORF5975P | |
| 5980 | 297 aa hypothetical protein | |||
| 8025 | BREX system P-loop protein BrxC | |||
| 8030 | RM | BglNGJ1ORFAP (74% identity) | AfeYQN3ORF8030P | |
| 8035 | ATP-binding protein | |||
| 10010 | 55 aa hypothetical protein | |||
| 10015 | M | M.AfeGT2ORF12720P (80% identity) | M.AfeYQN3ORF10015P | |
| 10020 | R | XfaXf6cORF1910P (81% identity) | AfeYQN3ORF10015P | |
| 10025 | ISL3 family transposase | |||
| 10085 | helix-turn-helix domain-containing protein | |||
| 10090 | M | M.AspYTS05ORF12850P (79% identity) | M.AfeYQN3ORF10090P | |
| 10095 | DUF3560 domain-containing protein | |||
| 10205 | ribbon-helix-helix protein, CopG family | |||
| 10210 | M | M.Rsp24678ORF3635P (85% identity) | M.AfeYQN3ORF10210P | |
| 10215 | 555 aa hypothetical protein | |||
| 10220 | restriction endonuclease-like protein | |||
| 10225 | V | V.Rsp24678ORF3635P (80% identity) | V.AfeYQN3ORF10210P | |
| 10230 | 521 aa hypothetical protein | |||
| 10325 | DNA binding domain-containing protein | |||
| 10330 | RM | MorE10ORF20230P (85% identity) | AfeYQN3ORF10330P | |
| 10335 | 287 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 15835 | 368 aa hypothetical protein | |||
| 15840 | M | M.AmuJZ6ORF21010P (86% identity) | M.AfeYQN3ORF15840P | |
| 15845 | V | V.AmuJZ6ORF21010P (100% identity) | V.AfeYQN3ORF15840P | |
| 15850 | type II restriction endonuclease | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14735 | 287 aa hypothetical protein | |||
| 14740 | R | Afe4253ORFAP (96% identity) | AfeYQN3ORF14745P | |
| 14745 | M | M.AfeBORF2793P (100% identity) | M.AfeYQN3ORF14745P | |
| 14750 | AAA family ATPase | |||