Escherichia coli NDM4 |
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Putative Escherichia coli NDM4 RM systems
Ref: Simner,P. et al. unpublished
REBASE ref # 33390
| Sequence length: | GenBank #: | |
| Chromosome: | 4,738,239 bp | CP083877 |
| plasmid unnamed1: | 158,041 bp | CP083878 |
REBASE acronym: EcoNDM4
Org_num: 53816
All begin LCE22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9305 | IS1 family transposase | |||
| 9310 | R | EcosNDM5ORF9185P (100% identity) | EcoNDM4ORF9310P | |
| 9315 | M48 family metallopeptidase | |||
| 17575 | GTPase family protein | |||
| 17580 | M | M.Sso8ORF17680P (100% identity) | AAAYNNNNNCTC | M.EcoNDM4ORF17580P |
| 17585 | S | S.EcosNDM5ORF17455P (100% identity) | AAAYNNNNNCTC | S.EcoNDM4ORF17580P |
| 17590 | R | Sso8ORF17680P (100% identity) | AAAYNNNNNCTC | EcoNDM4ORF17580P |
| 17595 | IS5 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 390 | ProQ/FinO family protein | |||
| 395 | M | M.SflFF24DndBP (100% identity) | M.EcoNDM4DndBP | |
| 400 | DNA phosphorothioation system sulfurtransferase | |||
| 395 | DNA sulfur modification protein DndB | |||
| 400 | M | M.SflFF24DndCP (100% identity) | M.EcoNDM4DndCP | |
| 405 | DNA sulfur modification protein DndD | |||
| 400 | DNA phosphorothioation system sulfurtransferase | |||
| 405 | M | M.SflFF24DndDP (100% identity) | M.EcoNDM4DndDP | |
| 410 | DNA sulfur modification protein DndE | |||
| 405 | DNA sulfur modification protein DndD | |||
| 410 | M | M.SflFF24DndEP (100% identity) | M.EcoNDM4DndEP | |
| 415 | DNA phosphorothioation-associated DGQHR protein | |||
| 420 | 172 aa hypothetical protein | |||
| 425 | R | Sen8497DptHP (100% identity) | EcoNDM4DptHP | |
| 430 | DNA phosphorothioation-dependent restriction | |||
| 425 | DNA phosphorothioation-dependent restriction | |||
| 430 | R | Sen8497DptGP (100% identity) | EcoNDM4DptGP | |
| 435 | DNA phosphorothioation-dependent restriction | |||
| 430 | DNA phosphorothioation-dependent restriction | |||
| 435 | R | SenLY67DptFP (100% identity) | EcoNDM4DptFP | |
| 440 | integrase | |||
| 2500 | 26 aa hypothetical protein | |||
| 2505 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoNDM4ORF2505P |
| 2510 | DNA-binding transcriptional regulator Fis | |||
| 8990 | phosphohydrolase | |||
| 8995 | M | M.EcosNDM5DcmP (100% identity) | CCWGG | M.EcoNDM4DcmP |
| 9000 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoNDM4DcmP |
| 9005 | drug/metabolite exporter YedA | |||
| 17800 | LexA family transcriptional regulator | |||
| 17805 | M | M.Sso8ORF17910P (100% identity) | GATC | M.EcoNDM4ORF17805P |
| 17810 | PerC family transcriptional regulator | |||
| 19665 | HNH endonuclease | |||
| 19670 | R | Sso8ORF19860P (100% identity) | EcoNDM4ORF19670P | |
| 19675 | 55 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 22865 | 103 aa hypothetical protein | |||
| 22870 | M | M.Sso8ORF23800P (100% identity) | SAY | M.EcoNDM4ORF22870P |
| 22875 | 73 aa hypothetical protein | |||
| 23690 | 103 aa hypothetical protein | |||
| 23695 | M | M.Sso8ORF23800P (100% identity) | SAY | M.EcoNDM4ORF23695P |
| 23700 | 73 aa hypothetical protein | |||