Escherichia coli Nissle 1917 |
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Putative Escherichia coli Nissle 1917 RM systems
Ref: Rybina,A. unpublished
REBASE ref # 33394
Complete sequence: 5,055,433 bp
GenBank #: CP082949
REBASE acronym: Eco1917b
Org_num: 53841
All begin K8943_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16250 | endoribonuclease SymE | |||
| 16255 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | Eco1917bORF16265P |
| 16260 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.Eco1917bORF16265P |
| 16265 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.Eco1917bORF16265P |
| 16270 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2305 | phage holin family protein | |||
| 2310 | M | M.EcoZE21ORF10265P (100% identity) | M.Eco1917bORF2310P | |
| 2315 | TrmB family transcriptional regulator | |||
| 2345 | RusA family crossover junction | |||
| 2350 | M | M.EcoZE21ORF10305P (99% identity) | M.Eco1917bORF2350P | |
| 2355 | conserved phage C-terminal domain-containing | |||
| 2860 | drug/metabolite exporter YedA | |||
| 2865 | V | V.EcosC25DcmP (100% identity) | CCWGG | V.Eco1917bDcmP |
| 2870 | M | M.SflC32DcmP (100% identity) | CCWGG | M.Eco1917bDcmP |
| 2875 | phosphohydrolase | |||
| 10725 | ribulose-phosphate 3-epimerase | |||
| 10730 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco1917bDamP |
| 10735 | cell division protein DamX | |||
| 15900 | helix-turn-helix domain-containing protein | |||
| 15905 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.Eco1917bORF15905P |
| 15910 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco1917bORF15905P |
| 15915 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco1917bORF15905P |
| 15920 | McrC family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15915 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 15920 | R | EcosS9McrCP (100% identity) | Eco1917bMcrCP | |
| 15925 | restriction endonuclease | |||
| 15930 | IS3-like element ISEc52 family transposase | |||
| 15935 | R | EcosS3McrBP (72% identity) | Eco1917bMcrBP | |
| 15940 | glycosyltransferase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22740 | recombination protein NinB | |||
| 22745 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco1917bORF22745P |
| 22750 | NinE family protein | |||