Salmonella enterica subsp. enterica serovar Derby FSIS11704880 |
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Putative Salmonella enterica subsp. enterica serovar Derby FSIS11704880 RM systems
Ref: Li,C. et al. unpublished
REBASE ref # 33764
| Sequence length: | GenBank #: | |
| Chromosome: | 4,900,578 bp | CP082411 |
| plasmid pF18S034-1: | 5,686 bp | CP082412 |
REBASE acronym: Sen4880
Org_num: 55197
All begin CVB56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2280 | endoribonuclease SymE | |||
| 2285 | S | S.SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | S.Sen4880ORF2290P |
| 2290 | M | M.SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | M.Sen4880ORF2290P |
| 2295 | R | SensTJX21ORF11885P (100% identity) | TACNNNNNNNGTTC | Sen4880ORF2290P |
| 2300 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 475 | 3-5 exoribonuclease | |||
| 480 | M | M.Sen60804ORF21505P (100% identity) | M.Sen4880ORF480P | |
| 485 | 173 aa hypothetical protein | |||
| 530 | helix-turn-helix domain-containing protein | |||
| 535 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Sen4880ORF535P |
| 540 | LexA family transcriptional regulator | |||
| 2120 | DEAD/DEAH box helicase | |||
| 2125 | RM | SensTJX21ORF12050P (100% identity) | Sen4880ORF2125P | |
| 2145 | fosfomycin resistance glutathione transferase | |||
| 2150 | R | SensTJX21ORF12025P (100% identity) | Sen4880ORF2150P | |
| 2155 | YebC/PmpR family DNA-binding transcriptional | |||
| 4385 | PerC family transcriptional regulator | |||
| 4390 | M | M.SflN101ORF11410P (100% identity) | GATC | M.Sen4880ORF4390P |
| 4395 | LexA family transcriptional regulator | |||
| 4420 | 92 aa hypothetical protein | |||
| 4425 | M | M.SensSZL38ORF10585P (100% identity) | M.Sen4880ORF4425P | |
| 4430 | phage holin, lambda family | |||
| 8160 | phosphohydrolase | |||
| 8165 | M | M.SensTJX21DcmP (100% identity) | CCWGG | M.Sen4880DcmP |
| 8170 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen4880DcmP |
| 8175 | drug/metabolite exporter YedA | |||
| 16290 | phage holin, lambda family | |||
| 16295 | M | M.SflLIN17ORF17405P (100% identity) | M.Sen4880ORF16295P | |
| 16300 | 67 aa hypothetical protein | |||
| 16325 | LexA family transcriptional regulator | |||
| 16330 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.Sen4880ORF16330P |
| 16335 | PerC family transcriptional regulator | |||
| 16395 | AAA family ATPase | |||
| 16400 | M | M.SenRM006ORF5335P (100% identity) | M.Sen4880ORF16400P | |
| 16405 | tyrosine-type recombinase/integrase | |||
| 19590 | 55 aa hypothetical protein | |||
| 19595 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Sen4880ORF19595P |
| 19600 | thermonuclease family protein | |||
| 20400 | ribulose-phosphate 3-epimerase | |||
| 20405 | M | M.StyTDamP (100% identity) | GATC | M.Sen4880DamP |
| 20410 | cell division protein DamX | |||
| plasmid pF18S034-1 | ||||
| 23665 | R | SenSerDORFAP (100% identity) | CCWWGG | Sen4880ORF23660P |
| 23670 | 72 aa hypothetical protein | |||
| 23675 | Rop family plasmid primer RNA-binding protein | |||
| 23680 | MobC family plasmid mobilization relaxosome | |||
| 23685 | relaxase/mobilization nuclease domain-containing | |||
| 23690 | MbeB family mobilization protein | |||
| 23695 | MbeD family mobilization/exclusion protein | |||
| 23660 | M | M.SenSerDORFAP (100% identity) | CCWWGG | M.Sen4880ORF23660P |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4765 | MFS transporter | |||
| 4770 | M | M.SensTJX21ORF9690P (100% identity) | CAGAG | M.Sen4880ORF4770P |
| 4775 | R | StyUK1IP (99% identity) | CAGAG | Sen4880ORF4770P |
| 4780 | small effector SsaA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2110 | 104 aa hypothetical protein | |||
| 2115 | R | SensTJX21ORF12060P (100% identity) | Sen4880ORF2115P | |
| 2120 | DEAD/DEAH box helicase | |||