Acidithiobacillus ferrooxidans BYM |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Acidithiobacillus ferrooxidans BYM RM systems
Ref: Yan,L. et al. unpublished
REBASE ref # 33091
Complete sequence: 3,208,389 bp
GenBank #: CP082238
REBASE acronym: AfeBYM
Org_num: 52783
All begin K7B00_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3190 | 226 aa hypothetical protein | |||
| 3195 | R | Afe40ORF3220P (100% identity) | AfeBYMORF3215P | |
| 3200 | 260 aa hypothetical protein | |||
| ??? | S | S.Afe40ORF3220P (100% identity) | S.AfeBYMORF3215P | |
| 3210 | FRG domain-containing protein | |||
| 3215 | M | M.Afe40ORF3220P (100% identity) | M.AfeBYMORF3215BP | |
| 3220 | 276 aa hypothetical protein | |||
| 3225 | M | M.Afe31ORF6370AP (86% identity) | M.AfeBYMORF3215AP | |
| 3230 | 473 aa hypothetical protein | |||
| 3760 | YbjQ family protein | |||
| 3765 | R | Afe4253ORFFP (100% identity) | AfeBYMORF3775P | |
| 3770 | KilA-N domain-containing protein | |||
| 3775 | M | M.Afe4253ORFFP (100% identity) | M.AfeBYMORF3775P | |
| 3780 | ATP-binding protein | |||
| 4270 | type I restriction endonuclease subunit R | |||
| 4275 | R | AfeYQN3ORF3730P (100% identity) | AfeBYMORF4280P | |
| 4280 | M | M.AfeYQN3ORF3730P (100% identity) | M.AfeBYMORF4280P | |
| 4285 | virulence RhuM family protein | |||
| 4290 | S | S.Asp221ORFSP (62% identity) | S.AfeBYMORF4280P | |
| 4295 | SIR2 family protein | |||
| 4930 | 85 aa hypothetical protein | |||
| 4935 | M | M.AfeYQN3ORF4390P (100% identity) | M.AfeBYMORF4935P | |
| 4940 | DUF4062 domain-containing protein | |||
| 4945 | virulence RhuM family protein | |||
| 4950 | S | S.Afe4253ORFDP (90% identity) | S.AfeBYMORF4935P | |
| 4955 | 937 aa hypothetical protein | |||
| 4960 | R | AfeYQN3ORF4390P (100% identity) | AfeBYMORF4935P | |
| 4965 | M48 family metallopeptidase | |||
| 11710 | ribonuclease HI | |||
| 11715 | M | M.AthLicORFOP (89% identity) | M.AfeBYMORF11715P | |
| 11720 | PIN domain-containing protein | |||
| 11725 | 76 aa hypothetical protein | |||
| 11730 | 67 aa hypothetical protein | |||
| 11735 | zeta toxin family protein | |||
| 11740 | S | S.AthLicORFOP (100% identity) | S.AfeBYMORF11715P | |
| 11745 | type II toxin-antitoxin system VapC family | |||
| 11750 | 89 aa hypothetical protein | |||
| 11755 | R | Afe4253ORFKP (94% identity) | AfeBYMORF11715P | |
| 11760 | 172 aa hypothetical protein | |||
| 11865 | metalloregulator ArsR/SmtB family transcription | |||
| 11875 | M | M.AfeYQN3ORF10580P (100% identity) | M.AfeBYMORF11875P | |
| 11880 | 67 aa hypothetical protein | |||
| 11885 | AAA family ATPase | |||
| 11890 | DEAD/DEAH box helicase | |||
| 11895 | 262 aa hypothetical protein | |||
| 11900 | S | S.AfeYQN3ORF10580P (100% identity) | S.AfeBYMORF11875P | |
| 11905 | 118 aa hypothetical protein | |||
| 11910 | ATP-binding protein | |||
| 11915 | R | AfeYQN3ORF10580P (100% identity) | AfeBYMORF11875P | |
| 11920 | 4-hydroxy-3-polyprenylbenzoate decarboxylase | |||
| 13855 | 260 aa hypothetical protein | |||
| 13860 | R | AfeBORF2418P (100% identity) | AfeBYMORF13885P | |
| 13865 | 261 aa hypothetical protein | |||
| 13870 | S | S.AfeBORF2418P (100% identity) | S.AfeBYMORF13885P | |
| 13875 | DUF4926 domain-containing protein | |||
| 13880 | 88 aa hypothetical protein | |||
| 13885 | M | M.AfeBORF2418P (100% identity) | M.AfeBYMORF13885P | |
| 13890 | GIY-YIG nuclease family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 660 | single-stranded DNA-binding protein | |||
| ??? | M | M.Afe31SspBP (100% identity) | M.AfeBYMSspBP | |
| 670 | M | M.Afe31SspCP (100% identity) | M.AfeBYMSspCP | |
| 675 | M | M.Afe31SspDP (100% identity) | M.AfeBYMSspDP | |
| 680 | DUF262 domain-containing HNH endonuclease family | |||
| 685 | IS256 family transposase | |||
| 690 | R | Afe31SspHP (100% identity) | AfeBYMSspHP | |
| 695 | R | Afe31SspGP (100% identity) | AfeBYMSspGP | |
| 700 | 75 aa hypothetical protein | |||
| 705 | IS256 family transposase | |||
| 710 | IS256 family transposase | |||
| 715 | R | Afe31SspFP (100% identity) | AfeBYMSspFP | |
| 720 | 111 aa hypothetical protein | |||
| 3315 | 82 aa hypothetical protein | |||
| 3320 | M | M.Afe40ORF3320P (100% identity) | M.AfeBYMORF3320P | |
| 3325 | 575 aa hypothetical protein | |||
| 5015 | BREX-1 system phosphatase PglZ type A | |||
| 5020 | RM | Afe40ORF5050CP (100% identity) | AfeBYMORF5020CP | |
| 5025 | RM | Afe40ORF5050BP (100% identity) | AfeBYMORF5020BP | |
| 5030 | helix-turn-helix domain-containing protein | |||
| 5035 | RM | Afe4253ORFHP (100% identity) | AfeBYMORF5020AP | |
| 5040 | BREX system P-loop protein BrxC | |||
| 6635 | 59 aa hypothetical protein | |||
| 6640 | M | M.Afe4253ORFJP (91% identity) | M.AfeBYMORF6640P | |
| 6645 | DUF3991 and toprim domain-containing protein | |||
| 11670 | N-6 DNA methylase | |||
| 11675 | RM | AspAMDIV (100% identity) | ACCCAC | AfeBYMORF11675P |
| 11680 | ATP-binding protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10665 | 308 aa hypothetical protein | |||
| 10670 | R | Afe40ORF10695P (100% identity) | AfeBYMORF10675P | |
| 10675 | M | M.Afe40ORF10695P (100% identity) | M.AfeBYMORF10675P | |
| 10680 | RloB family protein | |||
| 15755 | 287 aa hypothetical protein | |||
| 15765 | R | AfeYQN3ORF14745P (88% identity) | AfeBYMORF15770P | |
| 15770 | M | M1.Afe4253ORFAP (89% identity) | M.AfeBYMORF15770AP | |
| 15775 | IS256 family transposase | |||
| 15780 | M | M.AfeYQN3ORF14745P (85% identity) | M.AfeBYMORF15770BP | |
| 15785 | AAA family ATPase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15735 | 98 aa hypothetical protein | |||
| 15740 | R | AfeBMrr2P (100% identity) | AfeBYMMrrP | |
| 15745 | 86 aa hypothetical protein | |||