|
Putative Acidithiobacillus ferrooxidans BYM RM systems
Ref: Yan,L. et al. unpublished
REBASE ref # 33091
Complete sequence: 3,208,389 bp
GenBank #: CP082238
REBASE acronym: AfeBYM
Org_num: 52783
All begin K7B00_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
3190 | 226 aa hypothetical protein | |||
3195 | R | Afe40ORF3220P (100% identity) | AfeBYMORF3215P | |
3200 | 260 aa hypothetical protein | |||
??? | S | S.Afe40ORF3220P (100% identity) | S.AfeBYMORF3215P | |
3210 | FRG domain-containing protein | |||
3215 | M | M.Afe40ORF3220P (100% identity) | M.AfeBYMORF3215BP | |
3220 | 276 aa hypothetical protein | |||
3225 | M | M.Afe31ORF6370AP (86% identity) | M.AfeBYMORF3215AP | |
3230 | 473 aa hypothetical protein | |||
3760 | YbjQ family protein | |||
3765 | R | Afe4253ORFFP (100% identity) | AfeBYMORF3775P | |
3770 | KilA-N domain-containing protein | |||
3775 | M | M.Afe4253ORFFP (100% identity) | M.AfeBYMORF3775P | |
3780 | ATP-binding protein | |||
4270 | type I restriction endonuclease subunit R | |||
4275 | R | AfeYQN3ORF3730P (100% identity) | AfeBYMORF4280P | |
4280 | M | M.AfeYQN3ORF3730P (100% identity) | M.AfeBYMORF4280P | |
4285 | virulence RhuM family protein | |||
4290 | S | S.Asp221ORFSP (62% identity) | S.AfeBYMORF4280P | |
4295 | SIR2 family protein | |||
4930 | 85 aa hypothetical protein | |||
4935 | M | M.AfeYQN3ORF4390P (100% identity) | M.AfeBYMORF4935P | |
4940 | DUF4062 domain-containing protein | |||
4945 | virulence RhuM family protein | |||
4950 | S | S.Afe4253ORFDP (90% identity) | S.AfeBYMORF4935P | |
4955 | 937 aa hypothetical protein | |||
4960 | R | AfeYQN3ORF4390P (100% identity) | AfeBYMORF4935P | |
4965 | M48 family metallopeptidase | |||
11710 | ribonuclease HI | |||
11715 | M | M.AthLicORFOP (89% identity) | M.AfeBYMORF11715P | |
11720 | PIN domain-containing protein | |||
11725 | 76 aa hypothetical protein | |||
11730 | 67 aa hypothetical protein | |||
11735 | zeta toxin family protein | |||
11740 | S | S.AthLicORFOP (100% identity) | S.AfeBYMORF11715P | |
11745 | type II toxin-antitoxin system VapC family | |||
11750 | 89 aa hypothetical protein | |||
11755 | R | Afe4253ORFKP (94% identity) | AfeBYMORF11715P | |
11760 | 172 aa hypothetical protein | |||
11865 | metalloregulator ArsR/SmtB family transcription | |||
11875 | M | M.AfeYQN3ORF10580P (100% identity) | M.AfeBYMORF11875P | |
11880 | 67 aa hypothetical protein | |||
11885 | AAA family ATPase | |||
11890 | DEAD/DEAH box helicase | |||
11895 | 262 aa hypothetical protein | |||
11900 | S | S.AfeYQN3ORF10580P (100% identity) | S.AfeBYMORF11875P | |
11905 | 118 aa hypothetical protein | |||
11910 | ATP-binding protein | |||
11915 | R | AfeYQN3ORF10580P (100% identity) | AfeBYMORF11875P | |
11920 | 4-hydroxy-3-polyprenylbenzoate decarboxylase | |||
13855 | 260 aa hypothetical protein | |||
13860 | R | AfeBORF2418P (100% identity) | AfeBYMORF13885P | |
13865 | 261 aa hypothetical protein | |||
13870 | S | S.AfeBORF2418P (100% identity) | S.AfeBYMORF13885P | |
13875 | DUF4926 domain-containing protein | |||
13880 | 88 aa hypothetical protein | |||
13885 | M | M.AfeBORF2418P (100% identity) | M.AfeBYMORF13885P | |
13890 | GIY-YIG nuclease family protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
660 | single-stranded DNA-binding protein | |||
??? | M | M.Afe31SspBP (100% identity) | M.AfeBYMSspBP | |
670 | M | M.Afe31SspCP (100% identity) | M.AfeBYMSspCP | |
675 | M | M.Afe31SspDP (100% identity) | M.AfeBYMSspDP | |
680 | DUF262 domain-containing HNH endonuclease family | |||
685 | IS256 family transposase | |||
690 | R | Afe31SspHP (100% identity) | AfeBYMSspHP | |
695 | R | Afe31SspGP (100% identity) | AfeBYMSspGP | |
700 | 75 aa hypothetical protein | |||
705 | IS256 family transposase | |||
710 | IS256 family transposase | |||
715 | R | Afe31SspFP (100% identity) | AfeBYMSspFP | |
720 | 111 aa hypothetical protein | |||
3315 | 82 aa hypothetical protein | |||
3320 | M | M.Afe40ORF3320P (100% identity) | M.AfeBYMORF3320P | |
3325 | 575 aa hypothetical protein | |||
5015 | BREX-1 system phosphatase PglZ type A | |||
5020 | RM | Afe40ORF5050CP (100% identity) | AfeBYMORF5020CP | |
5025 | RM | Afe40ORF5050BP (100% identity) | AfeBYMORF5020BP | |
5030 | helix-turn-helix domain-containing protein | |||
5035 | RM | Afe4253ORFHP (100% identity) | AfeBYMORF5020AP | |
5040 | BREX system P-loop protein BrxC | |||
6635 | 59 aa hypothetical protein | |||
6640 | M | M.Afe4253ORFJP (91% identity) | M.AfeBYMORF6640P | |
6645 | DUF3991 and toprim domain-containing protein | |||
11670 | N-6 DNA methylase | |||
11675 | RM | AspAMDIV (100% identity) | ACCCAC | AfeBYMORF11675P |
11680 | ATP-binding protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
10665 | 308 aa hypothetical protein | |||
10670 | R | Afe40ORF10695P (100% identity) | AfeBYMORF10675P | |
10675 | M | M.Afe40ORF10695P (100% identity) | M.AfeBYMORF10675P | |
10680 | RloB family protein | |||
15755 | 287 aa hypothetical protein | |||
15765 | R | AfeYQN3ORF14745P (88% identity) | AfeBYMORF15770P | |
15770 | M | M1.Afe4253ORFAP (89% identity) | M.AfeBYMORF15770AP | |
15775 | IS256 family transposase | |||
15780 | M | M.AfeYQN3ORF14745P (85% identity) | M.AfeBYMORF15770BP | |
15785 | AAA family ATPase | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
15735 | 98 aa hypothetical protein | |||
15740 | R | AfeBMrr2P (100% identity) | AfeBYMMrrP | |
15745 | 86 aa hypothetical protein |