Escherichia coli Ec1079 |
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Putative Escherichia coli Ec1079 RM systems
Ref: Mahazu,S. et al. unpublished
REBASE ref # 32982
| Sequence length: | GenBank #: | |
| Chromosome: | 4,807,180 bp | CP081306 |
| plasmid pEc1079_1: | 98,473 bp | CP081307 |
| plasmid pEc1079_2: | 90,661 bp | CP081308 |
REBASE acronym: Eco1079
Org_num: 51714
All begin K5A55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5750 | IS1 family transposase | |||
| 5755 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco1079ORF5765P |
| 5760 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco1079ORF5765P |
| 5765 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco1079ORF5765P |
| 5770 | integrase core domain-containing protein | |||
| 14000 | transcription factor | |||
| 14005 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.Eco1079ORF14005P |
| 14010 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.Eco1079ORF14005P |
| 14015 | DUF4433 domain-containing protein | |||
| 14020 | macro domain-containing protein | |||
| 14025 | R | Sbo49812IP (99% identity) | YTCANNNNNNGTTY | Eco1079ORF14005P |
| 14030 | M48 family metallopeptidase | |||
| plasmid pEc1079_1 | ||||
| 23765 | IS1-like element IS1A family transposase | |||
| 23770 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | Eco1079ORF23780P |
| 23775 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.Eco1079ORF23780P |
| 23780 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.Eco1079ORF23780P |
| 23785 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1950 | cell division protein DamX | |||
| 1955 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco1079DamP |
| 1960 | ribulose-phosphate 3-epimerase | |||
| 2575 | DUF2556 family protein | |||
| 2580 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco1079ORF2580P |
| 2585 | DNA-binding transcriptional regulator Fis | |||
| 9305 | phosphohydrolase | |||
| 9310 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco1079DcmP |
| 9315 | V | V.SsoSE61DcmP (100% identity) | V.Eco1079DcmP | |
| 9320 | drug/metabolite exporter YedA | |||
| 22110 | 341 aa hypothetical protein | |||
| 22115 | M | M.EcosE2ORF21575P (100% identity) | M.Eco1079ORF22115P | |
| 22120 | 68 aa hypothetical protein | |||
| plasmid pEc1079_1 | ||||
| 23670 | 73 aa hypothetical protein | |||
| 23675 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco1079ORF23675P |
| 23680 | 102 aa hypothetical protein | |||
| plasmid pEc1079_2 | ||||
| 24275 | 216 aa hypothetical protein | |||
| 24280 | M | M.SenThORF23620P (98% identity) | M.Eco1079ORF24280P | |
| 24285 | glutamine--tRNA ligase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13315 | NADP-dependent isocitrate dehydrogenase | |||
| 13320 | R | EcosEC27McrCP (100% identity) | Eco1079McrCP | |
| 13325 | R | EcoteDMcrBP (100% identity) | Eco1079McrBP | |
| 13330 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15195 | replication endonuclease | |||
| 15200 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco1079ORF15200P |
| 15205 | TraR/DksA family transcriptional regulator | |||