Prevotella species Rep29 |
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Putative Prevotella species Rep29 RM systems
Ref: Hong,S.J. and Baik,M. unpublished
REBASE ref # 32876
Complete sequence: 2,730,135 bp
GenBank #: CP047159
REBASE acronym: PspRep29
Org_num: 51274
All begin GRF55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 510 | DUF262 domain-containing protein | |||
| 515 | R | PspE93IIP (95% identity) | TAAGNNNNNTGA | PspRep29IIP |
| 520 | 320 aa hypothetical protein | |||
| 525 | DUF3696 domain-containing protein | |||
| 530 | DUF262 domain-containing protein | |||
| 535 | S | S.Csp502ORF576P (38% identity) | TAAGNNNNNTGA | S2.PspRep29II |
| 540 | S | S1.PspE93IIP (72% identity) | S1.PspRep29IIP | |
| 545 | M | M.PspE93II (88% identity) | TAAGNNNNNTGA | M.PspRep29II |
| 550 | DUF2971 domain-containing protein | |||
| 1560 | 98 aa hypothetical protein | |||
| 1565 | S | S3.BspH184ORF1540P (38% identity) | S3.PspRep29IP | |
| 1570 | tyrosine-type recombinase/integrase | |||
| 1575 | S | S3.Bov3725ORF26680P (28% identity) | S2.PspRep29IP | |
| 1580 | S | S1.Pcr1447ORF2690P (38% identity) | GAAYNNNNNNRTC | S1.PspRep29I |
| 1585 | M | M.BspD22ORF3875P (79% identity) | GAAYNNNNNNRTC | M.PspRep29I |
| 1590 | 220 aa hypothetical protein | |||
| 1595 | R | Bxy514ORF14235P (71% identity) | GAAYNNNNNNRTC | PspRep29IP |
| 1600 | helix-turn-helix domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1465 | tryptophan--tRNA ligase | |||
| 1475 | M | M.Hpa788ORF3795P (80% identity) | M1.PspRep29ORF1475P | |
| 1480 | R | R2.Bsp3716PORF19355P (60% identity) | PspRep29ORF1475P | |
| 1485 | M | M2.EsaS1I (48% identity) | M2.PspRep29ORF1475P | |
| 1490 | bifunctional metallophosphatase/5-nucleotidase | |||
| 3215 | 467 aa hypothetical protein | |||
| 3220 | M | M.Pma19339ORFAP (69% identity) | M.PspRep29ORF3220P | |
| 3225 | R | LbaD12ORFDP (44% identity) | PspRep29ORF3220P | |
| 3230 | OmpA family protein | |||
| 4295 | phosphoglycerate kinase | |||
| 4300 | M | M.AspE39ORF9380P (65% identity) | M.PspRep29ORF4300P | |
| 4305 | DUF262 domain-containing protein | |||
| 4300 | modification methylase | |||
| 4305 | R | PspE225ORF4765P (89% identity) | PspRep29ORF4305P | |
| 4310 | collagenase-like protease | |||
| 4595 | ATP-binding cassette domain-containing protein | |||
| 4600 | M | M.Bxy2aORF45190P (70% identity) | M.PspRep29ORF4600P | |
| 4605 | R | Bba18169ORFDP (53% identity) | PspRep29ORF4600P | |
| 4610 | ACP S-malonyltransferase | |||
| 4860 | tyrosine-type recombinase/integrase | |||
| 4865 | M | M.CfaNSB1ORF11655P (73% identity) | M.PspRep29ORF4865P | |
| 4870 | AAA domain-containing protein | |||
| 5655 | 235 aa hypothetical protein | |||
| 5660 | M | M.BspN54ORFEP (41% identity) | M.PspRep29ORF5660P | |
| 5665 | glycoside hydrolase family 97 protein | |||
| 6745 | cyclic nucleotide-binding domain-containing | |||
| 6750 | M | M.Bhe36ORF1796P (53% identity) | M.PspRep29ORF6750P | |
| 6755 | HNH endonuclease | |||
| 7915 | 107 aa hypothetical protein | |||
| 7920 | RM | PspE93ORF13005P (51% identity) | PspRep29ORF7920P | |
| 7925 | SNF2/RAD54 family helicase | |||
| 9665 | 50S ribosomal protein L3 | |||
| 9670 | M | M.PspE1aORF7215P (72% identity) | M.PspRep29ORF9670P | |
| 9675 | 173 aa hypothetical protein | |||
| 9680 | R | ScoH2489ORFAP (56% identity) | PspRep29ORF9670P | |
| 9685 | Dam family site-specific | |||
| 9680 | restriction endonuclease | |||
| 9685 | M | M.PspE133ORF7400P (59% identity) | M.PspRep29ORF9685P | |
| 9690 | helix-turn-helix domain-containing protein | |||
| 9890 | 1222 aa hypothetical protein | |||
| 9895 | M | M.Pbr921ORF2570P (55% identity) | M.PspRep29ORF9895P | |
| 9900 | PglZ domain-containing protein | |||
| 10530 | NTP transferase domain-containing protein | |||
| 10540 | V | V.Por13071ORF769P (68% identity) | V.PspRep29ORF10570P | |
| 10545 | 378 aa hypothetical protein | |||
| 10550 | 156 aa hypothetical protein | |||
| 10555 | 88 aa hypothetical protein | |||
| 10560 | LlaJI family restriction endonuclease | |||
| 10565 | R | Pbi727ORF8090P (37% identity) | PspRep29ORF10570P | |
| 10570 | M | M.Pbi727ORF8090P (83% identity) | M.PspRep29ORF10570BP | |
| 10575 | M | M.Pni103ORF11315P (34% identity) | M.PspRep29ORF10570AP | |
| 10580 | ATP-binding protein | |||
| 10585 | C | C.Pma19339ORFFP (81% identity) | C.PspRep29ORF10570P | |
| 10590 | glycoside hydrolase family 95 protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 800 | type III restriction endonuclease subunit R | |||
| 805 | R | PbrB14ORF14525P (94% identity) | PspRep29ORF820P | |
| 810 | 215 aa hypothetical protein | |||
| 815 | ATP-binding protein | |||
| 820 | M | M.PbrB14ORF14525P (92% identity) | M.PspRep29ORF820P | |
| 825 | DEAD/DEAH box helicase family protein | |||
| 1020 | pyridoxamine kinase | |||
| 1025 | M | M.Psp1327ORF7745P (77% identity) | M.PspRep29ORF1025P | |
| 1030 | R | Psp1327ORF7745P (84% identity) | PspRep29ORF1025P | |
| 1035 | hemolysin III family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3400 | DUF1016 family protein | |||
| 3405 | R | PruKHP1McrBP (45% identity) | PspRep29McrBP | |
| 3410 | R | PruKHP1McrCP (68% identity) | PspRep29McrCP | |
| 3415 | 259 aa hypothetical protein | |||