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Putative Escherichia coli Ec42 RM systems
Ref: Mahazu,S. et al. unpublished
REBASE ref # 32719
Sequence length: | GenBank #: | |
Chromosome: | 4,943,457 bp | CP059119 |
plasmid pEc42_1: | 171,769 bp | CP059120 |
plasmid pEc42_2: | 82,943 bp | CP059121 |
REBASE acronym: EcoEc42
Org_num: 50661
All begin H0X94_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
18310 | GTPase family protein | |||
18315 | M | M.Sso8ORF17680P (100% identity) | AAAYNNNNNCTC | M.EcoEc42ORF18315P |
18320 | S | S.SdyFF51ORF19255P (100% identity) | AAAYNNNNNCTC | S.EcoEc42ORF18315P |
18325 | R | Sfl877IIP (100% identity) | AAAYNNNNNCTC | EcoEc42ORF18315P |
18330 | IS5-like element ISKpn26 family transposase | |||
18330 | IS5-like element ISKpn26 family transposase | |||
18335 | M | M.EcoZ147ORF19115P (87% identity) | M.EcoEc42ORF18335P | |
18340 | S | S1.SmaQC11ORF51970P (56% identity) | S.EcoEc42ORF18335P | |
18345 | DDE-type integrase/transposase/recombinase | |||
20155 | adenine/cytosine-specific restriction | |||
20160 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoEc42ORF20165P |
20165 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.EcoEc42ORF20165P |
20170 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoEc42ORF20165P |
20175 | endoribonuclease SymE | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1610 | cell division protein DamX | |||
1615 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoEc42DamP |
1620 | ribulose-phosphate 3-epimerase | |||
2245 | DUF2556 family protein | |||
2250 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoEc42ORF2250P |
2255 | DNA-binding transcriptional regulator Fis | |||
6805 | conserved phage C-terminal domain-containing | |||
6810 | M | M.KquC3001ORF7690P (99% identity) | M.EcoEc42ORF6810P | |
6815 | RusA family crossover junction | |||
7910 | 67 aa hypothetical protein | |||
7915 | M | M.SflSTLE1ORF5465P (100% identity) | M.EcoEc42ORF7915P | |
7920 | phage holin, lambda family | |||
9670 | phosphohydrolase | |||
9675 | M | M.EcosEC5DcmP (99% identity) | CCWGG | M.EcoEc42DcmP |
9680 | V | V.EcosEC7DcmP (100% identity) | V.EcoEc42DcmP | |
9685 | drug/metabolite exporter YedA | |||
13690 | RusA family crossover junction | |||
13695 | M | M.EcoCH611ORF410P (100% identity) | M.EcoEc42ORF13695P | |
13700 | conserved phage C-terminal domain-containing | |||
plasmid pEc42_1 | ||||
24505 | 73 aa hypothetical protein | |||
24510 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoEc42ORF24510P | |
24515 | 102 aa hypothetical protein | |||
plasmid pEc42_2 | ||||
24735 | 103 aa hypothetical protein | |||
24740 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoEc42ORF24740P | |
24745 | 73 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
20150 | GTPase | |||
20155 | R | EcosS1MrrP (100% identity) | EcoEc42MrrP | |
20160 | type I restriction-modification system |