Salmonella enterica LHICA_E3 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica LHICA_E3 RM systems
Ref: Lamas,A. et al. unpublished
REBASE ref # 31876
Complete sequence: 5,081,513 bp
GenBank #: CP079839
REBASE acronym: SenCAE3
Org_num: 51533
All begin JMJ87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10110 | ATP-binding protein | |||
| 10115 | R | SenCASA3ORF20230P (100% identity) | SenCAE3ORF10105P | |
| 10120 | S | S.SenCASA3ORF20230P (100% identity) | S.SenCAE3ORF10105P | |
| 10125 | type I restriction-modification system subunit | |||
| 10110 | ATP-binding protein | |||
| 10115 | R | SenCASA3ORF20230P (100% identity) | SenCAE3ORF10125P | |
| 10120 | S | S.SenCASA3ORF20230P (100% identity) | S.SenCAE3ORF10125P | |
| 10125 | M | M.SenCASA3ORF20230P (100% identity) | M.SenCAE3ORF10125P | |
| 10130 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 260 | YqaJ viral recombinase family protein | |||
| 265 | M | M.SenCASA1ORF6290P (100% identity) | GATC | M.SenCAE3ORF265P |
| 270 | DUF4060 family protein | |||
| 4360 | DNA-binding transcriptional regulator Fis | |||
| 4365 | M | M.SenSe29ORF2290P (100% identity) | ATGCAT | M.SenCAE3ORF4365P |
| 4370 | DUF2556 family protein | |||
| 4890 | ribulose-phosphate 3-epimerase | |||
| 4895 | M | M.SenSe29DamP (100% identity) | GATC | M.SenCAE3DamP |
| 4900 | cell division protein DamX | |||
| 8890 | 52 aa hypothetical protein | |||
| 8895 | R | SenCASA3ORF21450P (100% identity) | SenCAE3ORF8900P | |
| 8900 | M | M.SenCASA3ORF21450P (100% identity) | M.SenCAE3ORF8900P | |
| 8905 | DUF4942 domain-containing protein | |||
| 9970 | ParA family protein | |||
| 9980 | R | SenCASA3ORF20375P (100% identity) | SenCAE3ORF9980P | |
| 9985 | YebC/PmpR family DNA-binding transcriptional | |||
| 14450 | recombination protein NinB | |||
| 14455 | M | M.SenCASA1ORF16490P (100% identity) | M.SenCAE3ORF14455P | |
| 14460 | protein ninD | |||
| 15760 | 82 aa hypothetical protein | |||
| 15765 | M | M.SenCASA3ORF14970P (100% identity) | M.SenCAE3ORF15765P | |
| 15770 | 112 aa hypothetical protein | |||
| 20690 | drug/metabolite exporter YedA | |||
| 20695 | V | V.SenSe29DcmP (100% identity) | V.SenCAE3DcmP | |
| 20700 | M | M.SenCASA3DcmP (100% identity) | CCWGG | M.SenCAE3DcmP |
| 20705 | HD domain-containing protein | |||
| 23950 | DUF1317 domain-containing protein | |||
| 23955 | M | M.SenCASA1ORF6995P (100% identity) | M.SenCAE3ORF23955P | |
| 23960 | 59 aa hypothetical protein | |||
| 24655 | YqaJ viral recombinase family protein | |||
| 24660 | M | M.SenCASA1ORF6290P (100% identity) | GATC | M.SenCAE3ORF24660P |
| 24665 | DUF4060 family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12165 | MFS transporter | |||
| 12170 | M | M.SenCASA3ORF18180P (100% identity) | CAGAG | M.SenCAE3ORF12170P |
| 12175 | R | SenCASA3ORF18180P (100% identity) | CAGAG | SenCAE3ORF12170P |
| 12180 | 33 aa hypothetical protein | |||