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Putative Citrobacter freundii CF_324 RM systems
Ref: D'Souza,A.W. et al. Nat Commun 10 (1), 4569 (2019)
REBASE ref # 32588
Sequence length: | GenBank #: | |
Chromosome: | 4,996,134 bp | CP078020 |
plasmid pCF_324-2: | 258,843 bp | CP078021 |
plasmid pCF_324-3: | 124,568 bp | CP078022 |
plasmid pCF_324-4: | 109,598 bp | CP078023 |
REBASE acronym: Cfr324
Org_num: 50428
All begin EGK69_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
525 | IS5-like element ISKpn26 family transposase | |||
530 | S | S.Caq63ORFCP (23% identity) | S.Cfr324ORF535P | |
535 | M | M.TspS2ORFBP (73% identity) | M.Cfr324ORF535P | |
540 | tyrosine-type recombinase/integrase | |||
20665 | restriction endonuclease | |||
20670 | M | M.KpnF979ORF15685P (98% identity) | M.Cfr324ORF20670P | |
20675 | S | S.Sens29927ORF20165P (90% identity) | S.Cfr324ORF20670P | |
20680 | R | CyoL6ORF20850P (99% identity) | Cfr324ORF20670P | |
20685 | endoribonuclease SymE | |||
21970 | DUF262 domain-containing protein | |||
21975 | M | M.CspCF971ORF5910P (100% identity) | GAGNNNNNNRTTT | M.Cfr324ORF21975P |
21980 | S | S.Eho916ORF18625P (100% identity) | GAGNNNNNNRTTT | S.Cfr324ORF21975P |
21985 | R | CspCF971ORF5910P (100% identity) | GAGNNNNNNRTTT | Cfr324ORF21975P |
21990 | 94 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1735 | cell division protein DamX | |||
1740 | M | M.Eco11104DamP (100% identity) | GATC | M.Cfr324DamP |
1745 | ribulose-phosphate 3-epimerase | |||
2290 | DUF2556 family protein | |||
2295 | M | M.CspH1232ORFAP (100% identity) | ATGCAT | M.Cfr324ORF2295P |
2300 | DNA-binding transcriptional regulator Fis | |||
5905 | 72 aa hypothetical protein | |||
5910 | M | M.Eho44ORF5015P (96% identity) | M1.Cfr324ORF5910P | |
5915 | M | M1.EspB01ORF18715P (98% identity) | M2.Cfr324ORF5910P | |
5920 | DUF1317 domain-containing protein | |||
14220 | drug/metabolite exporter YedA | |||
14225 | V | V.CyoL6ORF9385P (99% identity) | V.Cfr324ORF14230P | |
14230 | M | M.CspH1232ORFCP (97% identity) | CCWGG | M.Cfr324ORF14230P |
14235 | phosphohydrolase | |||
17085 | Pyocin large subunit | |||
17090 | M | M1.Ecl11579ORF1992P (92% identity) | M.Cfr324ORF17090P | |
17095 | 67 aa hypothetical protein | |||
17145 | DUF1317 domain-containing protein | |||
17150 | M | M.Cfr96ORF16285P (95% identity) | M.Cfr324ORF17150P | |
17155 | 59 aa hypothetical protein | |||
17830 | DNA primase | |||
17835 | R | Sens24184ORF5380P (100% identity) | C | Cfr324ORF17835P |
17840 | inverse autotransporter beta domain-containing | |||
19040 | DUF1317 domain-containing protein | |||
19045 | M | M.Kox452ORF20735P (98% identity) | M.Cfr324ORF19045P | |
19050 | DUF2591 domain-containing protein | |||
plasmid pCF_324-2 | ||||
24985 | 55 aa hypothetical protein | |||
24990 | M | M.Cfr2206ORF26710P (97% identity) | M.Cfr324ORF24990P | |
24995 | thermonuclease family protein | |||
25430 | 102 aa hypothetical protein | |||
25435 | M | M.SenF8025ORFAP (86% identity) | M.Cfr324ORF25435P | |
25440 | 203 aa hypothetical protein | |||
25590 | DNA-binding protein | |||
25595 | M | M1.SenF8025ORFBP (100% identity) | M.Cfr324ORF25595P | |
25600 | 273 aa hypothetical protein | |||
plasmid pCF_324-3 | ||||
26240 | 76 aa hypothetical protein | |||
26245 | M | M.EspDR25ORFMP (100% identity) | M.Cfr324ORF26245P | |
26250 | 280 aa hypothetical protein | |||
plasmid pCF_324-4 | ||||
26660 | EAL domain-containing protein | |||
26665 | R | YpsR1ORFAP (100% identity) | CCWGG | Cfr324ORF26670P |
26670 | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.Cfr324ORF26670P |
26675 | IS1 family transposase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
21145 | DEAD/DEAH box helicase | |||
21150 | M | M.Cfr12C05ORF20675P (100% identity) | M.Cfr324ORF21150P | |
21155 | R | Cfr12C05ORF20675P (100% identity) | Cfr324ORF21150P | |
21160 | integrase arm-type DNA-binding domain-containing |