Salmonella enterica subsp. diarizonae LHICA_D1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. diarizonae LHICA_D1 RM systems
Ref: Lamas,A. et al. unpublished
REBASE ref # 31876
Complete sequence: 4,898,223 bp
GenBank #: CP078142
REBASE acronym: SenCAD1
Org_num: 51543
All begin JMJ85_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19755 | restriction endonuclease | |||
| 19760 | R | Sen10536VP (98% identity) | SenCAD1ORF19765P | |
| 19765 | M | M.Cwe364I (98% identity) | M.SenCAD1ORF19765P | |
| 19770 | S | S.Eco28C15ORF20380P (88% identity) | S.SenCAD1ORF19765P | |
| 19775 | protein kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1760 | cell division protein DamX | |||
| 1765 | M | M.Sen1855DamP (100% identity) | GATC | M.SenCAD1DamP |
| 1770 | ribulose-phosphate 3-epimerase | |||
| 2290 | DUF2556 family protein | |||
| 2295 | M | M.Sen8360ORF20600P (99% identity) | ATGCAT | M.SenCAD1ORF2295P |
| 2300 | DNA-binding transcriptional regulator Fis | |||
| 6005 | DUF4060 family protein | |||
| 6010 | M | M.SenCAD1ORF18160P (99% identity) | M.SenCAD1ORF6010P | |
| 6015 | YqaJ viral recombinase family protein | |||
| 6090 | 76 aa hypothetical protein | |||
| 6095 | M | M.Sen060ORF23725P (98% identity) | M.SenCAD1ORF6095P | |
| 6100 | 116 aa hypothetical protein | |||
| 9480 | phosphohydrolase | |||
| 9485 | M | M.SensS499DcmP (100% identity) | CCWGG | M.SenCAD1DcmP |
| 9490 | V | V.SensS499DcmP (100% identity) | V.SenCAD1DcmP | |
| 9495 | drug/metabolite exporter YedA | |||
| 18065 | DUF550 domain-containing protein | |||
| 18070 | M | M.SenYU39ORF2843P (94% identity) | M.SenCAD1ORF18070P | |
| 18075 | 81 aa hypothetical protein | |||
| 18155 | YqaJ viral recombinase family protein | |||
| 18160 | M | M.SenCAD1ORF6010P (99% identity) | M.SenCAD1ORF18160P | |
| 18165 | DUF4060 family protein | |||
| 20040 | replication endonuclease | |||
| 20045 | M | M1.Sen060ORF10030P (92% identity) | M1.SenCAD1ORF20045P | |
| 20050 | AsnC family protein | |||
| 20055 | M | M.Sen51472ORF12500P (80% identity) | M2.SenCAD1ORF20045P | |
| 20060 | 175 aa hypothetical protein | |||
| 20445 | helix-turn-helix domain-containing protein | |||
| 20450 | C | C.PaeHDR51ORF34825P (99% identity) | C.SenCAD1ORF20465P | |
| 20455 | helix-turn-helix domain-containing protein | |||
| 20460 | Crp/Fnr family transcriptional regulator | |||
| 20465 | M | M.Eho643ORF3135P (99% identity) | M.SenCAD1ORF20465P | |
| 20470 | R | KvaT01ORF23835P (99% identity) | SenCAD1ORF20465P | |
| 20475 | anaerobic sulfatase maturase | |||
| 20525 | 451 aa hypothetical protein | |||
| 20530 | M | M.Eae71ORF4057P (91% identity) | M.SenCAD1ORF20530P | |
| 20535 | 97 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17715 | 33 aa hypothetical protein | |||
| 17720 | R | SensS499ORF18165P (99% identity) | CAGAG | SenCAD1ORF17725P |
| 17725 | M | M.SensS499ORF18165P (99% identity) | CAGAG | M.SenCAD1ORF17725P |
| 17730 | MFS transporter | |||