Ref: Gonzalez,V. et al. Proc. Natl. Acad. Sci. U.S.A. 103 (10), 3834-3839 (2006) In press

REBASE ref # 9289

Sequence length:GenBank #:
Chromosome: 4,381,608 bp CP000133 (NC_007761)
plasmid p42f: 642,517 bp CP000138 (NC_007766)

REBASE acronym: Ret42

Org_num: 4254

 

All begin RHE_CH, RHE_PF

Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
1976 350 aa hypothetical conserved protein
??? M M.Rsp510ORF12421P (0% identity) M.Ret42ORF1977P
1978 333 aa hypothetical conserved protein
 
plasmid p42f
 
107 578 aa hypothetical conserved protein
108 M M.Rae950ORFFP (0% identity) ACCGGT M.Ret42ORF108P
109 193 aa hypothetical protein
??? V V.Sme4ORF23P (0% identity) V.Ret42ORF108P
111 169 aa hypothetical protein
 
110 probable DNA mismatch endonuclease protein
111 R Rae950ORFGP (0% identity) Ret42ORF111P
112 216 aa hypothetical protein
Type IV
ORF Gene Most similar Specificity Name
 
Chromosome
 
235 probable recombinase, resolvase family
236 R Rsp894Mrr2P (0% identity) Ret42MrrP
237 probable insertion sequence transposase protein,
Orphan M
ORF Gene Most similar Specificity Name
 
Chromosome
 
994 116 aa hypothetical conserved protein
995 M M.RetMim1ORF1016P (1% identity) GANTC M.Ret42ORF995P
996 probable hydrolase protein