Escherichia coli GD33 |
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Putative Escherichia coli GD33 RM systems
Ref: Zhao,Q.-y. unpublished
REBASE ref # 32724
| Sequence length: | GenBank #: | |
| Chromosome: | 4,689,116 bp | CP076646 |
| plasmid pNDM33-1: | 266,777 bp | CP076648 |
| plasmid pNDM33-2: | 113,068 bp | CP076647 |
REBASE acronym: EcoGD33
Org_num: 50682
All begin KP013_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9550 | 388 aa hypothetical protein | |||
| 9555 | M | M.EcoVEF10ORF18030P (100% identity) | M.EcoGD33ORF9555P | |
| 9560 | S | S1.EcoVEF10ORF18030P (100% identity) | S.EcoGD33ORF9555P | |
| 9565 | YecA family protein | |||
| 9570 | cold shock domain-containing protein | |||
| 9575 | R | EcoVEF10ORF18030P (100% identity) | EcoGD33ORF9555P | |
| 9580 | M48 family metallopeptidase | |||
| 9630 | IS1 family transposase | |||
| 9635 | M | M.SflLIN17ORF9030P (100% identity) | M.EcoGD33ORF9635P | |
| 9640 | S | S.Eco1613ORF24070P (100% identity) | S.EcoGD33ORF9635P | |
| 9645 | R | EcoG49ORF8820P (99% identity) | EcoGD33ORF9635P | |
| 9650 | M48 family metallopeptidase | |||
| 14835 | GTPase family protein | |||
| 14840 | M | M.EcosEC21ORF13545P (100% identity) | M.EcoGD33ORF14840P | |
| 14845 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1650 | cell division protein DamX | |||
| 1655 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoGD33DamP |
| 1660 | ribulose-phosphate 3-epimerase | |||
| 2230 | DUF2556 family protein | |||
| 2235 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoGD33ORF2235P |
| 2240 | DNA-binding transcriptional regulator Fis | |||
| 9230 | phosphohydrolase | |||
| 9235 | M | M.SflLIN6DcmP (99% identity) | CCWGG | M.EcoGD33DcmP |
| 9240 | V | V.SsoST152DcmP (100% identity) | V.EcoGD33DcmP | |
| 9245 | drug/metabolite exporter YedA | |||
| 15325 | replication endonuclease | |||
| 15330 | M | M.EcoE9ORF16415P (98% identity) | GATC | M.EcoGD33ORF15330P |
| 15335 | TraR/DksA family transcriptional regulator | |||
| plasmid pNDM33-1 | ||||
| 23540 | thermonuclease family protein | |||
| 23545 | M | M.YpsF1ORFCP (100% identity) | M.EcoGD33ORF23545P | |
| 23550 | 55 aa hypothetical protein | |||
| 24165 | 48 aa hypothetical protein | |||
| 24170 | M | M.YpsF1ORFBP (100% identity) | M.EcoGD33ORF24170P | |
| 24175 | 202 aa hypothetical protein | |||
| 24280 | DNA-binding protein | |||
| 24285 | M | M.YpsF1ORFDP (100% identity) | M.EcoGD33ORF24285P | |
| 24290 | 284 aa hypothetical protein | |||
| plasmid pNDM33-2 | ||||
| 22855 | IS6-like element IS26 family transposase | |||
| 22860 | R | Ssp3CORF24390P (100% identity) | CCWGG | EcoGD33ORF22865P |
| 22865 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.EcoGD33ORF22865P |
| 22870 | IS1 family transposase | |||
| 23050 | 103 aa hypothetical protein | |||
| 23055 | M | M.SspPIBORF23080P (100% identity) | M.EcoGD33ORF23055P | |
| 23060 | 73 aa hypothetical protein | |||