Salmonella enterica subsp. enterica serovar 4,[5],12:i:- L-3835 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar 4,[5],12:i:- L-3835 RM systems
Ref: Sekizuka,T. et al. unpublished
REBASE ref # 32950
Complete sequence: 4,995,025 bp
GenBank #: AP023288
REBASE acronym: Sen3835
Org_num: 51560
All begin SEL3835_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 39680 | restriction endonuclease | |||
| 39690 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen3835ORF39700P |
| 39700 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.Sen3835ORF39700P |
| 39710 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen3835ORF39700P |
| 39720 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3760 | cell division protein DamX | |||
| 3770 | M | M.StyTDamP (100% identity) | GATC | M.Sen3835DamP |
| 3780 | ribulose-phosphate 3-epimerase | |||
| 4690 | 54 aa hypothetical protein | |||
| 4700 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen3835ORF4700P |
| 4710 | DNA-binding protein Fis | |||
| 6520 | 77 aa hypothetical protein | |||
| 6530 | M | M.SensSZL38ORF19965P (100% identity) | M.Sen3835ORF6530P | |
| 6540 | replication protein A | |||
| 11170 | IS6 family transposase | |||
| 11180 | M | M.Ssp17155ORFGP (100% identity) | M.Sen3835ORF11180P | |
| 11190 | nuclease | |||
| 12340 | 174 aa hypothetical protein | |||
| 12350 | M | M.StyTORF1914P (100% identity) | M.Sen3835ORF12350P | |
| 12360 | 70 aa hypothetical protein | |||
| 18700 | 157 aa hypothetical protein | |||
| ??? | M | M.SenceORFKP (100% identity) | M.Sen3835ORF18710P | |
| 18720 | crossover junction endodeoxyribonuclease rusA | |||
| 19160 | phosphohydrolase | |||
| 19170 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen3835DcmP |
| 19180 | V | V.StyUK1DcmP (100% identity) | V.Sen3835DcmP | |
| 19190 | drug/metabolite exporter YedA | |||
| 40010 | 1213 aa hypothetical protein | |||
| 40020 | RM | StyUK1IV (100% identity) | GATCAG | Sen3835ORF40020P |
| 40030 | 363 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 34810 | 33 aa hypothetical protein | |||
| 34820 | R | StyUK1IP (99% identity) | CAGAG | Sen3835ORF34830P |
| 34830 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen3835ORF34830P |
| 34840 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 39670 | membrane protein | |||
| 39680 | R | StyUK1MrrP (100% identity) | Sen3835MrrP | |
| 39690 | type I restriction-modification system | |||