Escherichia coli TCM_B_2 |
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Putative Escherichia coli TCM_B_2 RM systems
Ref: liu,z. unpublished
REBASE ref # 30474
| Sequence length: | GenBank #: | |
| Chromosome: | 4,805,441 bp | CP075061 |
| plasmid pB2_2: | 108,031 bp | CP075057 |
| plasmid pCMY_B2_5: | 48,292 bp | CP075060 |
| plasmid pCTX_B2_4: | 101,922 bp | CP075059 |
| plasmid pMCR_B2_1: | 209,088 bp | CP075056 |
| plasmid pU_B2_3: | 107,542 bp | CP075058 |
REBASE acronym: EcoTCMB2
Org_num: 49784
All begin H4F95_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pB2_2 | ||||
| 1650 | IS1 family transposase | |||
| 1655 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNCTGG | EcoTCMB2ORF1665P |
| 1660 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoTCMB2ORF1665P |
| 1665 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNCTGG | M.EcoTCMB2ORF1665P |
| 1670 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7930 | PerC family transcriptional regulator | |||
| 7935 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.EcoTCMB2ORF7935P |
| 7940 | LexA family transcriptional regulator | |||
| 16615 | drug/metabolite exporter YedA | |||
| 16620 | V | V.SsoSE61DcmP (100% identity) | V.EcoTCMB2DcmP | |
| 16625 | M | M.EcoVCSW8DcmP (100% identity) | CCWGG | M.EcoTCMB2DcmP |
| 16630 | phosphohydrolase | |||
| 20095 | phage lysis protein EssD | |||
| 20100 | M | M.Sso63633ORF22290P (100% identity) | M.EcoTCMB2ORF20100P | |
| 20105 | 67 aa hypothetical protein | |||
| 20130 | LexA family transcriptional regulator | |||
| 20135 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoTCMB2ORF20135P |
| 20140 | PerC family transcriptional regulator | |||
| 23625 | DNA-binding transcriptional regulator Fis | |||
| 23630 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoTCMB2ORF23630P |
| 23635 | DUF2556 family protein | |||
| 24180 | ribulose-phosphate 3-epimerase | |||
| 24185 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoTCMB2DamP |
| 24190 | cell division protein DamX | |||
| plasmid pB2_2 | ||||
| 1555 | 73 aa hypothetical protein | |||
| 1560 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoTCMB2ORF1560P |
| 1565 | 102 aa hypothetical protein | |||
| plasmid pCMY_B2_5 | ||||
| 2925 | 103 aa hypothetical protein | |||
| 2930 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoTCMB2ORF2930P | |
| 2935 | 73 aa hypothetical protein | |||
| plasmid pCTX_B2_4 | ||||
| 2725 | 85 aa hypothetical protein | |||
| 2730 | M | M.Sen9860ORF25540P (99% identity) | M.EcoTCMB2ORF2730P | |
| 2735 | recombination-associated protein RdgC | |||
| plasmid pMCR_B2_1 | ||||
| 515 | 55 aa hypothetical protein | |||
| 520 | M | M.YpsF1ORFCP (100% identity) | M.EcoTCMB2ORF520P | |
| 525 | thermonuclease family protein | |||
| 940 | 48 aa hypothetical protein | |||
| 945 | M | M.YpsF1ORFBP (100% identity) | M.EcoTCMB2ORF945P | |
| 950 | 202 aa hypothetical protein | |||
| 1060 | DNA-binding protein | |||
| 1065 | M | M.YpsF1ORFDP (100% identity) | M.EcoTCMB2ORF1065P | |
| 1070 | 284 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pCTX_B2_4 | ||||
| 2415 | modulator protein | |||
| 2420 | M | M.SenSL0052ORF25975P (100% identity) | AGACC | M.EcoTCMB2ORF2420P |
| 2425 | R | Sen68045ORF16165P (100% identity) | AGACC | EcoTCMB2ORF2420P |
| 2430 | maturation control protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10930 | TraR/DksA family transcriptional regulator | |||
| 10935 | M | M.EcoNDM34ORF14995P (100% identity) | GATC | M.EcoTCMB2ORF10935P |
| 10940 | replication endonuclease | |||
| plasmid pU_B2_3 | ||||
| 2205 | 76 aa hypothetical protein | |||
| 2210 | M | M.Sso524ORF460P (100% identity) | M.EcoTCMB2ORF2210P | |
| 2215 | 269 aa hypothetical protein | |||