Dickeya dianthicola PA24 |
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Putative Dickeya dianthicola PA24 RM systems
Ref: Ge,T. unpublished
REBASE ref # 32309
Complete sequence: 4,909,043 bp
GenBank #: CP069595
REBASE acronym: DdiPA24
Org_num: 48861
All begin JRZ93_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3275 | 124 aa hypothetical protein | |||
| 3280 | S | S2.DdiME30ORF3295P (100% identity) | S2.DdiPA24ORF3290P | |
| 3285 | S | S1.DdiME30ORF3295P (100% identity) | S1.DdiPA24ORF3290P | |
| 3290 | M | M.DdiME30ORF3295P (100% identity) | M.DdiPA24ORF3290P | |
| 3295 | R | DdiME30ORF3295P (100% identity) | DdiPA24ORF3290P | |
| 3300 | ribosomal protein S18-alanine | |||
| 4585 | M48 family metallopeptidase | |||
| 4590 | R | DdiME30ORF4625P (100% identity) | DdiPA24ORF4615P | |
| 4595 | macro domain-containing protein | |||
| 4600 | DUF4433 domain-containing protein | |||
| 4605 | DUF4433 domain-containing protein | |||
| 4610 | S | S.DdiME30ORF4625P (100% identity) | S.DdiPA24ORF4615P | |
| 4615 | M | M.DdiME30ORF4625P (100% identity) | M.DdiPA24ORF4615P | |
| 4620 | transcription factor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2180 | amino acid transporter | |||
| 2185 | V | V.DdiME30ORF2190P (100% identity) | V.DdiPA24ORF2190P | |
| ??? | M | M.DdiMB01ORF2190P (100% identity) | M.DdiPA24ORF2190P | |
| 2195 | R | DdiME30ORF2190P (100% identity) | DdiPA24ORF2190P | |
| 2200 | MFS transporter | |||
| 3935 | 76 aa hypothetical protein | |||
| 3940 | M | M1.DdiME30ORF3945P (100% identity) | M.DdiPA24ORF3940P | |
| 3945 | DNA cytosine methyltransferase | |||
| 3940 | Dam family site-specific | |||
| 3945 | M | M2.DdiME30ORF3945P (100% identity) | M.DdiPA24ORF3945P | |
| 3950 | replication endonuclease | |||
| 3950 | replication endonuclease | |||
| 3955 | R | DdiME30ORF3965P (100% identity) | DdiPA24ORF3960P | |
| 3960 | M | M.DdiME30ORF3965P (100% identity) | TGGCCA | M.DdiPA24ORF3960P |
| 3965 | 51 aa hypothetical protein | |||
| 7335 | 857 aa hypothetical protein | |||
| 7340 | M | M.DdiME30ORF7355P (100% identity) | M.DdiPA24ORF7340P | |
| 7345 | DUF1738 domain-containing protein | |||
| 7775 | phosphonate metabolism protein PhnP | |||
| 7780 | R | DdiME30ORF7800P (100% identity) | DdiPA24ORF7785P | |
| 7785 | M | M.DdiME30ORF7800P (100% identity) | M.DdiPA24ORF7785P | |
| 7790 | phosphonate ABC transporter ATP-binding protein | |||
| 15935 | type II secretion system pilot lipoprotein GspS | |||
| 15940 | R | DdiME30ORF15960P (92% identity) | DdiPA24ORF15945P | |
| 15945 | M | M.DdiME30ORF15960P (100% identity) | M.DdiPA24ORF15945P | |
| 15950 | recombinase family protein | |||
| 16200 | 222 aa hypothetical protein | |||
| 16205 | M | M.DdiME30ORF16220P (100% identity) | M.DdiPA24ORF16205P | |
| 16210 | 67 aa hypothetical protein | |||
| 20280 | ribulose-phosphate 3-epimerase | |||
| 20285 | M | M.Dsp2401ORFJP (100% identity) | GATC | M.DdiPA24DamP |
| 20290 | SPOR domain-containing protein | |||