Salmonella enterica subsp. enterica serovar Dublin CFSAN000516 |
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Putative Salmonella enterica subsp. enterica serovar Dublin CFSAN000516 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 32354
| Sequence length: | GenBank #: | |
| Chromosome: | 4,857,751 bp | CP074229 |
| plasmid pCFSAN000516: | 66,105 bp | CP074230 |
REBASE acronym: Sen2469
Org_num: 49005
All begin JYN55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20400 | restriction endonuclease | |||
| 20405 | M | M.StySBLI (100% identity) | GGYANNNNNNTCG | M.Sen2469ORF20405P |
| 20410 | S | S1.Ssp3CORF11555P (100% identity) | GGYANNNNNNTCG | S.Sen2469ORF20405P |
| 20415 | R | Ssp3CORF11555P (100% identity) | GGYANNNNNNTCG | Sen2469ORF20405P |
| 20420 | DUF91 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1780 | cell division protein DamX | |||
| 1785 | M | M.StyTDamP (100% identity) | GATC | M.Sen2469DamP |
| 1790 | ribulose-phosphate 3-epimerase | |||
| 2270 | DUF2556 family protein | |||
| 2275 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen2469ORF2275P |
| 2280 | DNA-binding transcriptional regulator Fis | |||
| 5485 | TraR/DksA family transcriptional regulator | |||
| 5490 | M | M.Ssp8103ORF5415P (100% identity) | GATC | M.Sen2469ORF5490P |
| 5495 | replication endonuclease | |||
| 9150 | 249 aa hypothetical protein | |||
| 9155 | M | M.Ssp3CORF22905P (100% identity) | M.Sen2469ORF9155P | |
| 9160 | ead/Ea22-like family protein | |||
| 9225 | PerC family transcriptional regulator | |||
| ??? | M | M.Sen59898ORF9120P (100% identity) | M.Sen2469ORF9230P | |
| 9235 | RusA family crossover junction | |||
| 14100 | drug/metabolite exporter YedA | |||
| 14105 | V | V.StyUK1DcmP (100% identity) | V.Sen2469DcmP | |
| 14110 | M | M.Ssp3CDcmP (100% identity) | CCWGG | M.Sen2469DcmP |
| 14115 | phosphohydrolase | |||
| 14885 | DUF550 domain-containing protein | |||
| 14890 | M | M.Ssp3CORF17125P (100% identity) | M.Sen2469ORF14890P | |
| 14895 | ead/Ea22-like family protein | |||
| 20530 | YebC/PmpR family DNA-binding transcriptional | |||
| 20535 | R | SspSAL045ORF19515P (100% identity) | Sen2469ORF20535P | |
| 20540 | IS3 family transposase | |||
| plasmid pCFSAN000516 | ||||
| 23955 | recombinase family protein | |||
| 23960 | R | Ssp3CORF24390P (100% identity) | CCWGG | Sen2469ORF23965P |
| 23965 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.Sen2469ORF23965P |
| 23970 | IS1 family transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18190 | 33 aa hypothetical protein | |||
| 18195 | R | Ssp3CORF13760P (100% identity) | CAGAG | Sen2469ORF18200P |
| 18200 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen2469ORF18200P |
| 18205 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20395 | N-6 DNA methylase | |||
| 20400 | R | Ssp3CMrrP (100% identity) | Sen2469MrrP | |
| 20405 | type I restriction-modification system subunit | |||