Chloracidobacterium species D |
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Putative Chloracidobacterium species D RM systems
Ref: Saini,M.K. et al. unpublished
REBASE ref # 31909
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,641,344 bp | CP072634 |
| chromosome 2: | 994,244 bp | CP072635 |
REBASE acronym: CspsD
Org_num: 47141
All begin J8C01_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 12410 | 113 aa hypothetical protein | |||
| 12415 | M | M.CspsAORF11980P (89% identity) | M.CspsDORF12415P | |
| 12420 | DNA binding domain-containing protein | |||
| 12425 | nucleotidyltransferase family protein | |||
| 12430 | DUF86 domain-containing protein | |||
| 12435 | S | S2.CthsBORF14365P (99% identity) | S1.CspsDORF12415P | |
| 12440 | S | S.AspKB6II (30% identity) | S2.CspsDORF12415P | |
| 12445 | DEAD/DEAH box helicase family protein | |||
| 12440 | restriction endonuclease subunit S | |||
| 12445 | R | CspsDORF12415P (100% identity) | CspsDORF12450P | |
| 12450 | M | M.Btu2912ORF2965P (86% identity) | M.CspsDORF12450P | |
| 12455 | S | S.TspQS41ORF1045P (51% identity) | S.CspsDORF12450P | |
| 12460 | 294 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 195 | HEAT repeat domain-containing protein | |||
| 200 | M | M.CthEORF177P (99% identity) | M.CspsDORF200P | |
| 205 | R | CthsBORF195P (100% identity) | CspsDORF200P | |
| 210 | (2Fe-2S)-binding protein | |||
| 940 | NgoFVII family restriction endonuclease | |||
| 945 | RM | RspRSORF299P (84% identity) | CspsDORF945P | |
| 950 | transposase | |||
| 2035 | ABC transporter ATP-binding protein | |||
| 2040 | M | M.CthBORF415P (97% identity) | M.CspsDORF2040P | |
| 2045 | ABC transporter ATP-binding protein | |||
| 2920 | 270 aa hypothetical protein | |||
| 2925 | M | M.CthsBORF3040P (97% identity) | M.CspsDORF2925P | |
| 2930 | DNA adenine methylase | |||
| 2925 | DNA adenine methylase | |||
| 2930 | M | M.CspsBORF3940P (98% identity) | M.CspsDORF2930P | |
| 2935 | 515 aa hypothetical protein | |||
| 3650 | transposase | |||
| 3655 | RM | CthBORF745P (98% identity) | CspsDORF3655P | |
| 3660 | 380 aa hypothetical protein | |||
| 3665 | ATP-binding protein | |||
| 3670 | M | M.CthsBORF3810P (99% identity) | M.CspsDORF3670P | |
| 3675 | 216 aa hypothetical protein | |||
| 4700 | 228 aa hypothetical protein | |||
| 4705 | M | M.CthsBORF4880P (100% identity) | M.CspsDORF4705P | |
| 4710 | 527 aa hypothetical protein | |||
| 5835 | sensor histidine kinase | |||
| 5840 | R | CthsBORF6085P (97% identity) | CspsDORF5845P | |
| 5845 | M | M.Csp4045ORF5830P (87% identity) | M.CspsDORF5845P | |
| 5850 | DUF499 domain-containing protein | |||
| 8715 | 4Fe-4S dicluster domain-containing protein | |||
| 8720 | M | M.CspsBORF9805P (98% identity) | M.CspsDORF8720P | |
| ??? | R | CspsBORF9810P (89% identity) | CspsDORF8720P | |
| 8730 | C | C.OcyMTP1ORFDP (97% identity) | C.CspsDORF8720P | |
| 8735 | LptF/LptG family permease | |||
| 9290 | ABC transporter permease | |||
| 9295 | M | M.CthsBORF9775P (95% identity) | M.CspsDORF9295P | |
| 9300 | R | CthsBORF9775P (97% identity) | CspsDORF9295P | |
| 9305 | methylmalonyl-CoA epimerase | |||
| 9540 | nucleotidyltransferase domain-containing | |||
| 9545 | M | M.CthsBORF10035P (79% identity) | M.CspsDORF9545P | |
| 9550 | nucleotidyltransferase domain-containing | |||
| 9555 | R | CthsBORF10035P (97% identity) | CspsDORF9545P | |
| 9560 | DUF86 domain-containing protein | |||
| 10170 | M48 family metallopeptidase | |||
| 10175 | M | M.Csp4045ORF10110P (99% identity) | M.CspsDORF10175P | |
| 10180 | R | Csp4045ORF10110P (97% identity) | CspsDORF10175P | |
| 10185 | DUF433 domain-containing protein | |||
| 11020 | type II toxin-antitoxin system PemK/MazF family | |||
| 11025 | M | M.CthsBORF11485P (99% identity) | M.CspsDORF11025P | |
| 11030 | pseudogene | |||
| chromosome 2 | ||||
| 12315 | metal-dependent hydrolase | |||
| 12320 | M | M.OcyMTP1ORFTP (86% identity) | M.CspsDORF12320P | |
| 12325 | amidohydrolase family protein | |||
| 12380 | HEAT repeat domain-containing protein | |||
| 12385 | M | M.CthsBORF14505P (99% identity) | M.CspsDORF12385P | |
| 12390 | nucleotidyltransferase domain-containing | |||
| 12610 | APC family permease | |||
| 12620 | M | M.CthsBORF14155P (98% identity) | M.CspsDORF12620P | |
| 12625 | R | CthsBORF14155P (97% identity) | CspsDORF12620P | |
| 12630 | ABC transporter substrate-binding protein | |||
| 13240 | ABC transporter permease subunit | |||
| 13245 | M | M.CthsBORF13535P (98% identity) | M.CspsDORF13245P | |
| 13250 | transposase | |||
| 13460 | 253 aa hypothetical protein | |||
| 13465 | M | M.CspsBORF13145P (33% identity) | M.CspsDORF13465AP | |
| 13470 | transposase | |||
| 13475 | M | M.CspsBORF13145P (45% identity) | M.CspsDORF13465BP | |
| 13480 | transposase | |||
| 13835 | helicase | |||
| 13840 | M | M.CthsBORF12925P (98% identity) | M.CspsDORF13840P | |
| 13845 | PIN domain-containing protein | |||
| 14565 | NAD-dependent DNA ligase LigA | |||
| 14570 | M | M.CthsBORF11985P (97% identity) | M.CspsDORF14570P | |
| ??? | R | Csp4045ORF12960P (77% identity) | CspsDORF14570P | |
| 14585 | site-specific DNA-methyltransferase | |||
| 14580 | 192 aa hypothetical protein | |||
| ??? | M | M.CspsBORF11845P (80% identity) | M.CspsDORF14585P | |
| 14590 | Ig domain-containing protein | |||
| 14595 | transposase | |||
| 14600 | M | M.CspNORF14930P (63% identity) | M.CspsDORF14600AP | |
| 14605 | transposase | |||
| 14610 | M | M.CspsBORF11820BP (98% identity) | M.CspsDORF14600BP | |
| 14615 | R | CthsBORF11955P (97% identity) | CspsDORF14600P | |
| 14620 | NAD+ synthase | |||
| 14905 | tetratricopeptide repeat protein | |||
| 14910 | M | M.CspsBORF15355P (98% identity) | M.CspsDORF14910P | |
| 14915 | ferritin-like domain-containing protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 11375 | DNA/RNA non-specific endonuclease | |||
| 11380 | R | UbaMSORFD24P (31% identity) | CspsDORF11385P | |
| 11385 | M | M.OcyMTP1ORFNP (52% identity) | M.CspsDORF11385P | |
| 12825 | 50S ribosomal protein L28 | |||
| 12830 | R | CspsAORF16020P (96% identity) | CspsDORF12840P | |
| 12835 | nucleotidyltransferase domain-containing | |||
| 12840 | M | M.CspsAORF16020P (85% identity) | M.CspsDORF12840P | |
| 12845 | type III restriction endonuclease subunit R | |||
| 13375 | alpha/beta fold hydrolase | |||
| 13380 | M | M.HthTH1ORF516P (52% identity) | M.CspsDORF13380P | |
| 13385 | R | Rsp98ORF8250P (67% identity) | CspsDORF13380P | |
| 13390 | 322 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 10560 | 86 aa hypothetical protein | |||
| 10565 | R | CthsBMrrP (97% identity) | CspsDMrrP | |
| 10570 | DNA polymerase I | |||