Parabacteroides merdae CL06T03C08 |
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Putative Parabacteroides merdae CL06T03C08 RM systems
Ref: Garcia-Bayona,L. et al. PLoS Genet 17 (4), e1009541 (2021)
REBASE ref # 31897
Complete sequence: 4,697,288 bp
GenBank #: CP072229
REBASE acronym: Pme3C08
Org_num: 48578
All begin INE87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2017 | Tn916 family transposase | |||
| 2018 | S | S4.Pin2834ORF11205P (68% identity) | S2.Pme3C08ORF2021P | |
| 2019 | S | S1.BfrQ1F2ORF4845P (82% identity) | S1.Pme3C08ORF2021P | |
| 2020 | Virulence protein RhuM family protein | |||
| 2021 | M | M.Pme12C32ORF3934P (99% identity) | M.Pme3C08ORF2021P | |
| 2022 | 232 aa hypothetical protein | |||
| 2023 | R | BspMGS14ORFBP (99% identity) | Pme3C08ORF2021P | |
| 2024 | Methyltransferase small domain protein | |||
| 3806 | helix-turn-helix protein | |||
| 3807 | R | PspAT13IP (100% identity) | Pme3C08ORF3808P | |
| 3808 | M | M.PspAT13I (100% identity) | M.Pme3C08ORF3808P | |
| 3809 | S | S1.PspAT13IP (100% identity) | S1.Pme3C08ORF3808P | |
| 3810 | S | S2.PspAT13I (68% identity) | S2.Pme3C08ORF3808P | |
| 3811 | S | S4.Bun113350ORF33430P (26% identity) | S3.Pme3C08ORF3808P | |
| 3812 | Phage integrase family protein | |||
| 3813 | S | S2.Bth7853ORF13460P (55% identity) | S4.Pme3C08ORF3808P | |
| 3814 | Plasmid recombination enzyme | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 297 | 76 aa hypothetical protein | |||
| ??? | M | M.Pdi238ORF3395P (68% identity) | M.Pme3C08ORF299P | |
| 300 | 92 aa hypothetical protein | |||
| 326 | 80 aa hypothetical protein | |||
| 327 | M | M.Pdi426ORF15210P (83% identity) | M.Pme3C08ORF327P | |
| 328 | Prephenate dehydrogenase | |||
| 872 | TIR domain protein | |||
| 873 | R | Pdi592ORF20530P (100% identity) | Pme3C08ORF873P | |
| 874 | Adenine-specific methyltransferase EcoRI | |||
| 873 | Protein of unknown function DUF262 | |||
| 874 | M | M.Pdi592ORF20530P (100% identity) | M.Pme3C08ORF874P | |
| 875 | helix-turn-helix protein | |||