Lachnospiraceae bacterium oral taxon 096 F0428 |
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Putative Lachnospiraceae bacterium oral taxon 096 F0428 RM systems
Ref: Johnston,C.D. et al. unpublished
REBASE ref # 31062
Complete sequence: 2,241,976 bp
GenBank #: CP073340
REBASE acronym: Lba428
Org_num: 48058
All begin J5A74_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2010 | site-specific integrase | |||
| 2015 | R | LbaF0428ORF755P (85% identity) | Lba428ORF2035P | |
| 2020 | S | S.LbaF0428ORF755P (49% identity) | S2.Lba428ORF2035P | |
| 2025 | transposase | |||
| 2030 | S | S.LbaF0428ORF755P (61% identity) | S1.Lba428ORF2035P | |
| 2035 | M | M.LbaF0428ORF755P (100% identity) | M.Lba428ORF2035P | |
| 2040 | DIP1984 family protein | |||
| 2660 | cysteine hydrolase | |||
| 2665 | R | LbaF0428IP (100% identity) | RAAANNNNNNNTCTY | Lba428IP |
| 2670 | S | S2.LbaF0428IP (100% identity) | S2.Lba428IP | |
| 2675 | tyrosine-type recombinase/integrase | |||
| 2680 | S | S1.LbaF0428I (100% identity) | RAAANNNNNNNTCTY | S1.Lba428I |
| 2685 | M | M.LbaF0428I (99% identity) | RAAANNNNNNNTCTY | M.Lba428I |
| 2690 | CbrC family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 545 | WYL domain-containing protein | |||
| 550 | M | M.LbaF0428DndBP (100% identity) | M.Lba428DndBP | |
| 555 | DNA phosphorothioation system sulfurtransferase | |||
| 550 | DNA sulfur modification protein DndB | |||
| 555 | M | M.LbaF0428DndCP (100% identity) | M.Lba428DndCP | |
| 560 | DNA sulfur modification protein DndD | |||
| 555 | DNA phosphorothioation system sulfurtransferase | |||
| 560 | M | M.LbaF0428DndDP (100% identity) | M.Lba428DndDP | |
| 565 | DNA sulfur modification protein DndE | |||
| 560 | DNA sulfur modification protein DndD | |||
| 565 | M | M.LbaF0428DndEP (100% identity) | M.Lba428DndEP | |
| 570 | aminotransferase class V-fold PLP-dependent | |||
| 565 | DNA sulfur modification protein DndE | |||
| 570 | M | M.LbaF0428DndAP (100% identity) | M.Lba428DndAP | |
| 575 | 220 aa hypothetical protein | |||
| 2885 | IS3 family transposase | |||
| 2890 | C | C.AarGH2ORF4570P (94% identity) | C.Lba428ORF2905P | |
| 2895 | NUDIX domain-containing protein | |||
| 2900 | R | LbaF0428ORF10590P (100% identity) | Lba428ORF2905P | |
| 2905 | M | M2.LbaF0428ORF10590P (100% identity) | M1.Lba428ORF2905P | |
| 2910 | M | M1.LbaF0428ORF10590P (96% identity) | M2.Lba428ORF2905P | |
| 2915 | helix-turn-helix transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9990 | A/G-specific adenine glycosylase | |||
| 9995 | R | LbaF0428McrCP (100% identity) | Lba428McrCP | |
| 10000 | R | LbaF0428McrBP (100% identity) | Lba428McrBP | |
| 10005 | DNA alkylation repair protein | |||