Prevotella nigrescens F0109 |
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Putative Prevotella nigrescens F0109 RM systems
Ref: Johnston,C.D. et al. unpublished
REBASE ref # 31062
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,227,666 bp | CP072339 |
| chromosome 2: | 654,262 bp | CP072338 |
REBASE acronym: Pni109
Org_num: 48665
All begin J5A59_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2830 | helix-turn-helix transcriptional regulator | |||
| 2835 | M | M.PmeOORF6123P (99% identity) | CCANNNNNRTC | M.Pni109II |
| 2840 | tyrosine-type recombinase/integrase | |||
| 2845 | S | S1.Por13071IP (96% identity) | S1.Pni109IIP | |
| 2850 | Fic family protein | |||
| 2855 | S | S2.Pbi727ORF3965P (59% identity) | CCANNNNNRTC | S2.Pni109II |
| 2860 | 118 aa hypothetical protein | |||
| 2865 | S | S3.Por13071IP (98% identity) | S3.Pni109IIP | |
| 2870 | abortive infection family protein | |||
| 2875 | R | Ppa13043ORF547P (97% identity) | CCANNNNNRTC | Pni109IIP |
| 2880 | metallophosphatase family protein | |||
| 5375 | HNH endonuclease | |||
| 5380 | R | Pni9336IIP (98% identity) | GWAGNNNNNGTT | Pni109IP |
| 5385 | S | S.Pni9336II (56% identity) | GWAGNNNNNGTT | S.Pni109I |
| 5390 | M | M.Pni9336II (96% identity) | GWAGNNNNNGTT | M.Pni109I |
| 5395 | WYL domain-containing protein | |||
| chromosome 2 | ||||
| 2570 | IS982 family transposase | |||
| 2575 | M | M.Pni103ORF11160P (95% identity) | M.Pni109ORF2575P | |
| 2580 | 159 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3025 | DUF4294 domain-containing protein | |||
| 3030 | R | PinWW414ORF4330P (80% identity) | Pni109ORF3035P | |
| 3035 | M | M.Pin1741ORF3080P (88% identity) | M.Pni109ORF3035P | |
| 3040 | SRPBCC family protein | |||
| 4430 | helicase | |||
| 4435 | RM | Pme760ORF10970P (83% identity) | Pni109ORF4435P | |
| 4440 | 287 aa hypothetical protein | |||
| 5910 | 67 aa hypothetical protein | |||
| 5915 | R | Pdi11157IVP (94% identity) | GTSAC | Pni109IIIP |
| ??? | M | M.Pni630III (97% identity) | GTSAC | M.Pni109III |
| 5925 | transposase | |||
| chromosome 2 | ||||
| 1895 | R | Pni630VP (97% identity) | GGATG | Pni109IVP |
| 1900 | M | M2.Pni630V (98% identity) | GGATG | M2.Pni109IV |
| 1905 | M | M1.Pni630V (99% identity) | GGATG | M1.Pni109IV |
| 1910 | 279 aa hypothetical protein | |||