Helicobacter pylori MT5118 |
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Putative Helicobacter pylori MT5118 RM systems
Ref: Mannion,A. et al. J Clin Microbiol (2021) In press
REBASE ref # 32133
Complete sequence: 1,628,076 bp
GenBank #: CP071975
REBASE acronym: HpyMT5118
Org_num: 48216
All begin J4T92_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2145 | RNA degradosome polyphosphate kinase | |||
| 2155 | S | S.HpyLI06XIV (99% identity) | CCANNNNNNTTA | S.HpyMT5118ORF2160P |
| 2160 | M | M.HpyCOL206III (92% identity) | CCANNNNNNTTA | M.HpyMT5118ORF2160P |
| 2165 | R | HpyU206ORF2140P (91% identity) | CCANNNNNNTTA | HpyMT5118ORF2160P |
| 2170 | motility associated factor glycosyltransferase | |||
| 4020 | hydroxyethylthiazole kinase | |||
| 4025 | R | HpyF001XIIIP (95% identity) | CTANNNNNNCTC | HpyMT5118XP |
| 4030 | S | S.HpyCOL207VI (96% identity) | CTANNNNNNCTC | S.HpyMT5118X |
| 4035 | M | M.HpyMT5136ORF4045P (97% identity) | CTANNNNNNCTC | M.HpyMT5118X |
| 4040 | phosphatase PAP2 family protein | |||
| 6600 | restriction endonuclease subunit R | |||
| 6605 | R | HpyCOL206ORF7320P (97% identity) | HpyMT5118ORF6610P | |
| 6610 | M | M.HpyC014XIV (96% identity) | M.HpyMT5118ORF6610P | |
| 6615 | S | S.HpyCOL206ORF7320P (100% identity) | S.HpyMT5118ORF6610P | |
| 6620 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 245 | agmatine/peptidylarginine deiminase | |||
| 250 | M | M1.HpyCOL206V (100% identity) | CCTC | M1.HpyMT5118II |
| 255 | M | M2.HpyCOL206VP (100% identity) | CCTC | M2.HpyMT5118IIP |
| 260 | R | HpyCOL206VP (100% identity) | CCTC | HpyMT5118IIP |
| 265 | restriction endonuclease | |||
| 260 | HNH endonuclease | |||
| 265 | R | HpyCOL206ORF270P (100% identity) | CCTTC | HpyMT5118ORF270P |
| 270 | M | M.HpyCOL206ORF270P (98% identity) | CCTTC | M.HpyMT5118ORF270P |
| 275 | sodium/proline symporter PutP | |||
| 455 | ACP S-malonyltransferase | |||
| 465 | R | HpyCOL209VIIIP (100% identity) | GATC | HpyMT5118IVP |
| 470 | M | M.HpyH021VII (97% identity) | GATC | M.HpyMT5118IV |
| 475 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1255 | exodeoxyribonuclease VII large subunit | |||
| ??? | M | M.HpyMTT79ORFPP (92% identity) | TCGA | M.HpyMT5118VII |
| 1265 | 204 aa hypothetical protein | |||
| 1265 | 204 aa hypothetical protein | |||
| 1270 | R | HpySP610ORF1490P (90% identity) | CCGG | HpyMT5118VIIIP |
| 1275 | M | M.HpyU434IV (100% identity) | CCGG | M.HpyMT5118VIII |
| 1280 | AAA family ATPase | |||
| 2230 | Hop family outer membrane protein HopJ/HopK | |||
| 2235 | M | M.HpyMT5124III (99% identity) | ATTAAT | M.HpyMT5118ORF2235P |
| 2240 | glycosyltransferase family 9 protein | |||
| 2245 | translational GTPase TypA | |||
| 2250 | M | M.HpyCOL303II (99% identity) | ACNGT | M.HpyMT5118IX |
| 2255 | R | HpyCOL303IIP (100% identity) | ACNGT | HpyMT5118IXP |
| 2260 | DNA cytosine methyltransferase | |||
| 2255 | GIY-YIG nuclease family protein | |||
| 2260 | M | M.HpySWT01ORF2355P (84% identity) | M.HpyMT5118ORF2260P | |
| 2265 | catalase | |||
| 2360 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| ??? | M | M.HpyGCT43ORF2270P (98% identity) | GTAC | M.HpyMT5118V |
| 2370 | R | HpySP313VIIIP (97% identity) | GTAC | HpyMT5118VP |
| 2375 | peptidoglycan DD-metalloendopeptidase family | |||
| 3160 | (Fe-S)-binding protein | |||
| 3165 | RM | HpyG036ORF3135P (72% identity) | HpyMT5118ORF3165P | |
| 3170 | 379 aa hypothetical protein | |||
| 3245 | 3-5 exonuclease | |||
| 3250 | M | M.HpyCOL318ORF3225P (100% identity) | M.HpyMT5118ORF3250P | |
| 3255 | R | HpyCOL318ORF3225P (100% identity) | HpyMT5118ORF3250P | |
| 3260 | 3-5 exonuclease | |||
| 4310 | flagellar hook protein FlgE | |||
| 4315 | R | HpyGE21XIIP (91% identity) | GTNNAC | HpyMT5118VIP |
| ??? | M | M.HpyCHN3VIII (96% identity) | GTNNAC | M.HpyMT5118VI |
| 4325 | ATP-dependent helicase | |||
| 5150 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5155 | M | M.HpyPE136XIV (99% identity) | TCNNGA | M.HpyMT5118ORF5155P |
| 5160 | R | HpyNG06XIP (97% identity) | TCNNGA | HpyMT5118ORF5155P |
| 5165 | Laminin subunit alpha-2 precursor | |||
| 5360 | 144 aa hypothetical protein | |||
| ??? | M | M.HpyAL7XIV (95% identity) | GCGC | M.HpyMT5118ORF5365P |
| 5370 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5820 | HAD family hydrolase | |||
| 5825 | M | M.HpyU204I (99% identity) | CATG | M.HpyMT5118I |
| 5830 | IceA2 protein | |||
| 6205 | glycosyltransferase family 9 protein | |||
| 6210 | M | M.Hpy376ORF6355P (99% identity) | GATATC | M.HpyMT5118ORF6210P |
| 6215 | R | HpyNCI26ORFCP (97% identity) | GATATC | HpyMT5118ORF6210P |
| 6220 | glycosyltransferase family 9 protein | |||
| 6435 | IS607 family transposase | |||
| 6440 | M | HpyBR25ORF6675P (53% identity) | M.HpyMT5118ORF6440P | |
| 6445 | carboxylating nicotinate-nucleotide | |||
| 6680 | type III restriction-modification system | |||
| 6685 | RM | HpyIS1ORF7230P (76% identity) | HpyMT5118ORF6685P | |
| 6690 | 180 aa hypothetical protein | |||
| 6905 | ComF family protein | |||
| 6910 | RM | Hpy24AORFZP (97% identity) | HpyMT5118ORF6910P | |
| 6915 | S | S.HpySP323ORF7575P (65% identity) | S.HpyMT5118ORF6910P | |
| 6920 | DNA polymerase I | |||
| 7230 | DNA methyltransferase | |||
| 7235 | M | M.HpyCOL307VII (100% identity) | GANTC | M.HpyMT5118III |
| 7240 | R | Hpy5019ORF4255P (98% identity) | GANTC | HpyMT5118IIIP |
| 7245 | PDZ domain-containing protein | |||
| 7440 | 196 aa hypothetical protein | |||
| 7445 | M | M.HpyNCI26ORFQP (100% identity) | M.HpyMT5118ORF7445P | |
| 7450 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6495 | copper response regulator transcription factor | |||
| 6500 | M | M.HpySP103ORF385P (95% identity) | M.HpyMT5118ORF6500P | |
| 6505 | R | Hpy376ORF390P (83% identity) | HpyMT5118ORF6500P | |
| 6510 | 148 aa hypothetical protein | |||
| 6530 | biotin synthase | |||
| 6535 | R | HpyCOL206ORF7390P (99% identity) | HpyMT5118ORF6540P | |
| 6540 | M | M.HpyCOL206ORF7390P (100% identity) | M.HpyMT5118ORF6540P | |
| 6545 | DNA/RNA non-specific endonuclease | |||
| 6670 | ATP-dependent DNA helicase RecG | |||
| 6675 | M | M.HpyCO2XX (97% identity) | M.HpyMT5118ORF6675P | |
| 6680 | R | HpyCOL318ORF6705P (97% identity) | HpyMT5118ORF6675P | |
| 6685 | class I SAM-dependent DNA methyltransferase | |||